Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq8 84.2 2e-11 seq7 84.2 2e-11 >seq3 Length=136109863 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | | |||||| || ||||| ||||| || || |||||||||||| | Sbjct 25369569 CCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGCA 25369628 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| | |||||| || || |||||||||| || || || || Sbjct 25369629 AGGGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAAATAAGCCTTTGCTGGTCAGGAGGG 25369688 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| || || | ||| | |||| | |||| Sbjct 25369689 ATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACC 25369748 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 25369749 TCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 25369795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || |||||||||||||| || || || || || || |||||||| | Sbjct 25369113 CCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCA 25369172 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | || || || || | || |||||||||||||| || Sbjct 25369173 AGCGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTGGA 25369232 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| |||||||| ||| || |||||| | | ||| | ||| | |||| Sbjct 25369233 ATGCCCTCTTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCCACC 25369292 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || ||||| || ||||||||||| ||||| Sbjct 25369293 TCCAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || ||||| ||||| || || || || ||| || | ||| |||||||| Sbjct 25368452 ATGGAGGGTCGATTCCTTTTGGATATTATAGTCTGCCAATGTACGACCATCCTCCAATTG 25368511 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 |||||| ||| | || |||||||| ||||| ||| | || || ||||| ||| || Sbjct 25368512 TTTGCCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 25368571 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-TTTCCACGGTAATGGTTTTGCCGG 20183 ||||| | ||| | |||| || || || |||| ||||||||||| || | Sbjct 25368572 CGCCTTCACATTATCAATGGTATCG-GAGCTTTCGACCTCCAAAGTAATGGTTTTCCCCG 25368630 Query 20184 TCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || |||||||||||||| Sbjct 25368631 TCAGGGTCTTCACAAAAATTTGCAT 25368655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||||| |||||||| | |||||||| ||||| ||||||||||| | Sbjct 25368657 CCACCACGGAGCCTCAGAACCAAATGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCA 25368716 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||| | || || || ||| | || |||||||| ||||| || Sbjct 25368717 AGAGTACGGCCATCTTCAAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGAGGG 25368776 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| ||| || ||||| | ||| | ||| | ||| Sbjct 25368777 ATACCCTCTTTGTCCTGAATCTTCGCCTTCACATTATCAATTGTATCAGAACTTTCAACC 25368836 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || || || || |||||||| || |||||||| ||||||||| Sbjct 25368837 TCCAAAGTGATTGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCATT 25368884 >seq8 Length=129606920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| ||||| || ||||| || || |||||||| Sbjct 83941490 TTTGATCATGGTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGTGTCGACTCCTTTTGTAT 83941549 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 |||||| ||| | | ||| |||||||| || ||||||||| | || |||||||| Sbjct 83941550 GTTGTAGTCGGCAAGAGTGCGCCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTG 83941609 Query 20089 TTGATC 20094 || || Sbjct 83941610 CTGGTC 83941615 >seq7 Length=126351151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| ||||| || ||||| || || |||||||| Sbjct 110666482 TTTGATCATGGTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGTGTCGACTCCTTTTGTAT 110666541 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | | ||| |||||||| || ||||||||| | || |||||||| Sbjct 110666542 GTTGTAATCCGCAAGAGTGCGCCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTG 110666601 Query 20089 TTGATC 20094 || || Sbjct 110666602 CTGGTC 110666607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419584397681988