Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 109 3e-19 seq7 107 1e-18 seq5 107 1e-18 seq1 107 1e-18 seq2 105 3e-18 >seq3 Length=136109863 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| |||| |||||||| | | |||||||| ||||||||||||||||||| Sbjct 6632540 AAAAAAAAATGTAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 6632481 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 6632480 ACGACGCTCTAACCAACTGAGCTAATAGGCC 6632450 >seq7 Length=126351151 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 124466788 TAAAAAATGAG--TGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGA 124466731 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 124466730 CGCTCTAACCAACTGAGCTAATAGGCC 124466704 >seq5 Length=149900536 Score = 107 bits (118), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 |||||| |||||||| ||| |||||||| ||||||||||||||||||||| ||||||| Sbjct 109661173 TCAAAT-GGCCCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTA 109661231 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 109661232 ACCAACTGAGCTAATAGGCC 109661251 Score = 107 bits (118), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 |||||| |||||||| ||| |||||||| | ||||||||||||||||||||||||||| Sbjct 109698792 TCAAAT-GGCCCATGCAAGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGCTCTA 109698850 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 109698851 ACCAACTGAGCTAATAGGCC 109698870 Score = 105 bits (116), Expect = 3e-18 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||| ||| |||||||| ||| |||||||| ||||||||||||||||||||| |||||| Sbjct 109729018 AATCTAAT-GGCCCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTC 109729076 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||| |||| Sbjct 109729077 TAACCAACTGAGCTAATAGGCC 109729098 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| |||| |||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 4386688 AAAGAATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 4386630 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 4386629 GCTCTAACCAACTGAGCTAATAGGCC 4386604 Score = 102 bits (112), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 |||||| |||||||| ||| |||||||| | ||||||||||||||||||||||| ||| Sbjct 109742064 TCAAAT-GGCCCATGCAAGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGTTCTA 109742122 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 109742123 ACCAACTGAGCTAATAGGCC 109742142 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 109754768 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAACCAAC 109754827 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109754828 TGAGCTAATAGGCC 109754841 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 109758327 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAACCAAC 109758386 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109758387 TGAGCTAATAGGCC 109758400 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 109776861 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 109776920 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109776921 TGAGCTAATAGGCC 109776934 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | | |||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 109700627 TGGCCCAAGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 109700686 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109700687 TGAGCTAATAGGCC 109700700 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||| |||||||||||||||| ||| |||||| Sbjct 109749231 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGTTCTAACCAAC 109749290 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109749291 TGAGCTAATAGGCC 109749304 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||| | |||||||||||||||||||||| |||||| |||||| Sbjct 109751568 TGGCCCATGCAGGTCTCGAACTTGCGACCTTCGCGTTATTAGCACGGCGCTCTAACCAAC 109751627 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109751628 TGAGCTAATAGGCC 109751641 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | | |||||| ||||||||||||||||||||||||| ||| |||||| Sbjct 109752681 TGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGTTCTAACCAAC 109752740 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109752741 TGAGCTAATAGGCC 109752754 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| ||| | |||| | | |||||||||||||||||||| |||||| |||||| Sbjct 109631831 TGGCCCATGCAAGTCTTGAACTTGCAACCTTCGCGTTATTAGCACGGCGCTCTAACCAAC 109631890 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109631891 TGAGCTAATAGGCC 109631904 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||| | ||||||||||||||||||||||||| | | |||||| Sbjct 109744139 TGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGACGTTATAACCAAC 109744198 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109744199 TGAGCTAATAGGCC 109744212 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||| | | ||||||||||||||||||||| ||||| |||||| Sbjct 109774965 TGGCCCATGCAGGTCTCGAACTTGCAACCTTCGCGTTATTAGCACGATGCTCTAACCAAC 109775024 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 109775025 TGAGCTAATAGGCC 109775038 Score = 84.2 bits (92), Expect = 1e-11 Identities = 67/83 (81%), Gaps = 9/83 (11%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC---------GCT 11506 ||||||||| | | |||||||| |||||||||||||||||||||||| ||| Sbjct 109761880 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACTAGCACGATGCT 109761939 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 109761940 CTAACCAACTGAGCTAATAGGCC 109761962 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||| ||||||||||||||| ||||| |||||| Sbjct 109697847 TGGCCCATGCAGGTCTCGAACCTGGGACCTCAGCGTTATTAGCACGAAGCTCTAACCAAC 109697906 Query 11516 TGAGCTAATGGGCC 11529 ||| ||||| |||| Sbjct 109697907 TGAACTAATAGGCC 109697920 >seq1 Length=137414913 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| ||| |||||||||| | | |||||||| |||||||||||||||||||| Sbjct 114358689 ATCAAAAATTAAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 114358630 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| ||||||||||||||| |||| Sbjct 114358629 CAACGCTCTAACCAACTGAGCTAATAGGCC 114358600 >seq2 Length=108997779 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 98596391 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 98596332 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 98596331 CTGAGCTAATAGGCC 98596317 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489453565648