Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 seq3 95.1 1e-14 >seq6 Length=137147148 Score = 104 bits (114), Expect = 3e-17 Identities = 376/577 (65%), Gaps = 35/577 (6%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCA 125816 ||| |||||||| ||||| || |||||||| |||||||| | |||| | || |||| Sbjct 120287285 GTACTCCCCAACACGCTTTTCAAAGAAGTTGGTCTTCCCCTG-AAGCGAAATAAGTTCCA 120287343 Query 125817 TAAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 | ||||||| ||||||| ||| | || || ||| ||||| || | || Sbjct 120287344 TCCAATCAAAAGGGTTCTGAACATTG---TACACCTTCTTG-CACCC-AAGCGCCACCAG 120287398 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 | ||||| | ||| ||||||| |||| | |||| || |||||| || | | Sbjct 120287399 CAACCGATCTGCAACGAACTCAATATACTGACTCATCAGGTCTCCGTTCATTCCTACCAA 120287458 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 || || |||||||| | | ||| || |||| || |||||||| ||| |||||| Sbjct 120287459 CGCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCTATATCCACGGCGTCCTTCACGAT 120287518 Query 125992 GGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCA-AAGTCTTGAAGAGTTC--CACG- 126046 | | | ||| | ||| | | || | || ||| ||||| | || | Sbjct 120287519 CCCCTTCACACGCTCCTCAGGCAGCT-TCTTTCTCAGAAG------AGAGTACAGCAAGC 120287571 Query 126047 --GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || || || ||| || || || || || ||||| | || ||||||||| | | Sbjct 120287572 ACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAAC 120287631 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 ||||||| | || ||||| |||| ||| || |||| || || || |||||||||| Sbjct 120287632 CTGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGA 120287691 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCA- 126223 | || || ||||| |||||||| | || || || || || ||| | || | || Sbjct 120287692 TCCCTTCGACACAGGCGAACGCGACGATGCGTTCCGCGAA------CGATTCTGAGCCAT 120287745 Query 126224 --AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 126281 | ||| | ||||||| || || |||| | || || ||||||| || || | Sbjct 120287746 CGATCCATCGTAGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAATTGCGT 120287805 Query 126282 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 ||||| ||||| ||||||| ||||||||||| Sbjct 120287806 GGAAGAGACGATTCTTCTCTGATGAGTCTTTGATGTA 120287842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 |||||||||||||| |||||||| || || ||||| || || | ||||| ||| | || Sbjct 141398 AAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 141455 Query 10937 ATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | | ||| || | | ||| | || ||||| ||||| ||||| |||||||| || | Sbjct 141456 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 141515 Query 10995 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 |||| | ||| || ||| ||||| | ||| | || | ||||| || || Sbjct 141516 ACGG-CGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCA 141574 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 ||||||| ||||| || | | || | || || ||| || || || ||||| Sbjct 141575 ACAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCG 141634 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCA 11173 || | || || || || ||||||||||| || |||||| ||| | ||||| || Sbjct 141635 GCAACCGCCCGAGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCT 141694 Query 11174 CGTGGGATCCTGGCACC 11190 ||||||| | ||||| Sbjct 141695 TTTGGGATCTTAGCACC 141711 >seq3 Length=136109863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| || ||| | ||| || || || || || | |||||| || | ||||| Sbjct 131892780 GTCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCAAA 131892839 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC-- 10936 |||||||| || ||||| || ||||||| || ||||| | |||||||||| | Sbjct 131892840 CCCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCCACC 131892899 Query 10937 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 || ||| | | || ||| | || || || ||||||||||| | ||| || || || Sbjct 131892900 AATTCCAGTCCCTCT---TTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCA 131892956 Query 10996 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || ||| || || |||| || | ||| ||||||| ||||||| ||| Sbjct 131892957 AGGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACGGACTCGTGAAGCACCGATACCA 131893014 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112 |||||||| || ||||| | | | || |||| || ||| || || | |||||| Sbjct 131893015 ACAAACATCTCAACAAACTCAGAACCTGAG-ATTGAGAAGAACGGAACACCAGCTTCACC 131893073 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||||| || ||| | ||||||||||| || ||||| Sbjct 131893074 AGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 131893112 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 115233 ||| ||||||||||| ||||| ||||| || ||||| | || || ||||| | ||| Sbjct 115211020 TTGAGGCCTTGGTGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTG 115210961 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGG---GAATGTCTTCCCCGTGAATACCGAT 115290 |||||| | | ||| || || ||| |||| ||||| ||| |||||| || | Sbjct 115210960 AGACATCATGTGGTAAGT-TC--TGACAGCGGATTCTATGTCATCCTTGTGAATTCCAAC 115210904 Query 115291 CGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAG 115350 | |||| ||| ||||||| ||||| |||||| | | || | | | || ||| Sbjct 115210903 AGCAACCCTCATCAACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAG 115210844 Query 115351 GTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 ||| | |||||| ||| |||| |||||| ||| || |||| ||||||| Sbjct 115210843 GTAGGACCTCTCCAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCCCT 115210793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349508127840