Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 seq6 95.1 9e-15 >seq3 Length=136109863 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || || || || || || || || || |||||||||||| Sbjct 25369567 TGCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGG 25369626 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || |||| | ||||| | |||||| || ||| | || | | || ||||| | Sbjct 25369627 CAAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAAATAAGCCTTTGCTGGTCAGGAG 25369686 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||| || || ||||||| || ||| | || || |||||| | |||| | Sbjct 25369687 GGATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCA 25369746 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || |||| ||||| || || |||||||| Sbjct 25369747 CCTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 25369795 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 ||||||||| ||| | | ||| || ||||| || || || || || ||||||||||| | Sbjct 25369339 TGCCACCTCTCAAACGGAGAACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTG 25369398 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || || | || | || || | || || ||||| | ||||| | ||| ||||| | Sbjct 25369399 CT-AGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGT 25369457 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || || || || ||||| ||||| ||| ||| | || || || || ||| Sbjct 25369458 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTGTCAATGGTGTCTGAGGATTCG 25369517 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| |||||||| || |||| || || || ||||||||||| Sbjct 25369518 ACCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAAAATTTGCAT 25369567 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || || ||||| || || || || || ||| || | || || ||| Sbjct 25368452 ATGGAGGGTCGATTCCTTTTGGATATTATAGTC--TGCCAATGTACGACCATCCTCCAAT 25368509 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||||||||| | || | | ||| || || ||||| || |||||||| ||| Sbjct 25368510 TGTTTGCCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATC 25368569 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || || ||| | || || |||||| |||| || || || ||||||||||| || Sbjct 25368570 TTCGCCTTCACATTATCAATGGTATCGGAGCTTTCGACCTCCAAAGTAATGGTTTTCCCC 25368629 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||||||||||||| Sbjct 25368630 GTCAGGGTCTTCACAAAAATTTGCATA 25368656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| | | |||| || | || Sbjct 124971764 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 124971705 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | || | |||||| ||||| |||||| ||||||||||| || ||| Sbjct 124971704 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTG 124971645 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||| | || || || | ||| ||||| || || || Sbjct 124971644 GCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTT 124971585 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 124971584 AGGGTTTTCACGAAGATCTGCATCTTTG 124971557 >seq6 Length=137147148 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| || | ||| | ||| | || || || || |||||||||||||| Sbjct 34075248 CCTCCACGCAACCTAAGAACAAGATGCAACGTCGACTCCTTCTGTATGTTGTAATCAGCA 34075307 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| |||| |||||||| || |||||| | || | |||||||| || || Sbjct 34075308 AGCGTCCTCCCGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGG 34075367 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| ||| || || | ||||| || || | ||| || Sbjct 34075368 ATTCCTTCTTTATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACC 34075427 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 34075428 TCGAGAGTTATGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 34075474 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 14933 ATCAGCAACCAT-GTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTT 14991 |||||||| || || || || || | || | ||| | ||| ||||| || || ||| Sbjct 34075002 ATCAGCAATCAGAGTTCACCGCCACGGAGCCTGAGAACAAGATGGAGGGTGGACTCCTTT 34075061 Query 14992 TGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAA 15051 || |||||||||||| ||| | | |||| || | || || ||||| | || | | Sbjct 34075062 TGAATGTTGTAATCGGCCAGAGTGCGTCCGTCCTCAAGCTGCTTCCCAGCAAAGATTAGA 34075121 Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTAT 15110 ||||| ||||| |||||| || || ||||| || ||||| || || | || || Sbjct 34075122 CGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGTATCTTTGC-CTTCACGTTATCAAT 34075180 Query 15111 AGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15170 |||||| | | || || ||||| || || || || || || ||||| || || ||||| Sbjct 34075181 AGTATCAGAACTCTCCACCTCTAACGTTATCGTCTTCCCGGTTAGAGTCTTCACGAAAAT 34075240 Query 15171 TTGCAT 15176 ||||| Sbjct 34075241 CTGCAT 34075246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389613068180