Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq4 95.1 1e-14 seq3 89.7 6e-13 >seq6 Length=137147148 Score = 105 bits (116), Expect = 8e-18 Identities = 217/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||||||||||||||| |||||||| || || ||||| || || | ||||| ||| | | Sbjct 141397 GAAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--G 141454 Query 12851 CATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | ||| || | | ||| | || ||||| ||||| || ||||||||||| || Sbjct 141455 CCTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATG 141514 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||||| | ||| || ||| ||||| | ||| | ||| | ||||| || || Sbjct 141515 CACGG-CGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCC 141573 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 ||||||| |||||| || | | || | || || ||| || || || ||||| Sbjct 141574 AACAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACC 141633 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 || | || || || || ||||||||||| || || ||| |||| | ||||| || Sbjct 141634 GGCAACCGCCCGAGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCC 141693 Query 13088 ACGTGGGATCCTGGCACC 13105 ||||||| | ||||| Sbjct 141694 TTTTGGGATCTTAGCACC 141711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/261 (68%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || || || || ||||| | || ||||||||| | ||||||||| | || Sbjct 120287585 GTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGCATTAACCC 120287644 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| |||| ||| || |||| || || || |||||||||||||| || ||||| Sbjct 120287645 GCGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCGACACA 120287704 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | | || || || || || || ||| | ||| | || Sbjct 120287705 GGCGAACGCGACGATGCGTTCCGCGAACGATTCTGA---GCCATCGATCCATCGTAGGGC 120287761 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| || || |||| | || || ||||||| || || | ||||| ||||| Sbjct 120287762 CCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAATTGCGTGGAAGAGACGATTCTT 120287821 Query 127771 TTCTGATGGATCTTTGATGTA 127791 ||||||| ||||||||||| Sbjct 120287822 CTCTGATGAGTCTTTGATGTA 120287842 >seq4 Length=133615181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/256 (69%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || ||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 21681937 GTCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAA 21681878 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | | Sbjct 21681877 CCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCT 21681820 Query 12854 ACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | | || | || | |||| | || || || || ||||| |||| ||||| || || Sbjct 21681819 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAA 21681760 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || || | ||||| ||||| | Sbjct 21681759 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAA 21681702 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 21681701 CAAACATCTCAACAAA 21681686 >seq3 Length=136109863 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||| ||||||||||| ||||| ||||| || ||||| | || || ||||| | ||| Sbjct 115211020 TTGAGGCCTTGGTGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTG 115210961 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGG---GAATGTCTTCCCCGTGAATACCGAT 117251 |||||| | | ||| || || ||||| || ||||| ||| |||||| || | Sbjct 115210960 AGACATCATGTGGTAAGT-TC--TGACAGCGGATTCTATGTCATCCTTGTGAATTCCAAC 115210904 Query 117252 TGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAG 117311 | |||| ||| ||||||| ||||| |||||| | | || | | | || ||| Sbjct 115210903 AGCAACCCTCATCAACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAG 115210844 Query 117312 GTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 ||| | |||||| ||| |||| |||||| || || |||| ||||||| Sbjct 115210843 GTAGGACCTCTCCAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCCCT 115210793 Score = 86.0 bits (94), Expect = 8e-12 Identities = 226/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || ||| | ||| || || || || || | |||||| || | || || Sbjct 131892780 GTCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCAAA 131892839 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC-- 12851 |||||||| || ||||| || ||||||| || ||||| | |||||||||| | Sbjct 131892840 CCCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCCACC 131892899 Query 12852 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 || ||| | | || ||| | || || || |||||||| |||| ||| || || || Sbjct 131892900 AATTCCAGTCCCTCT---TTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCA 131892956 Query 12911 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| || || |||| || | ||| || |||| ||||||| ||| Sbjct 131892957 AGGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACGGACTCGTGAAGCACCGATACCA 131893014 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | | | | | |||| || ||| || || | |||||| Sbjct 131893015 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCACC 131893073 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||||| || ||| | ||||||||||| || || || Sbjct 131893074 AGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 131893112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502997475680