Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 136 3e-27 seq6 105 5e-18 seq5 104 2e-17 seq9 86.0 5e-12 >seq3 Length=136109863 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||||||||||||||| ||| ||| || |||||||||||||| | || | | Sbjct 25369122 AGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCAAGCGTCCTT 25369181 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || || || | ||||||||| | |||| |||||| Sbjct 25369182 CCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTGGAATGCCCTCT 25369241 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | ||||| | |||||||||| || Sbjct 25369242 TTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCCACCTCCAGTGTT 25369301 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || |||||||||||||| Sbjct 25369302 ATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || ||| || ||||| || |||||||||| | | ||| Sbjct 125684154 AGACGCAACACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGCCAAGGTGCGA 125684213 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| |||| | ||| || |||| ||||| |||||| Sbjct 125684214 CCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCC 125684273 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | | || || ||| || |||| || Sbjct 125684274 TTGTCTTGGATCTTTGCTTTGACATTATCGATGGTGTCCGAACTCTCAACTTCCAGGGTG 125684333 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || ||||||||||| Sbjct 125684334 ATTGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 125684371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| ||||| || || | | | ||| | || ||||| || || || ||||| Sbjct 25368465 TCCTTTTGGATATTATAGTCTGCCAATGTACGACCATCCTCCAATTGTTTGCCAGCAAAG 25368524 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||||| ||||| ||||||||||| |||||| || ||| | Sbjct 25368525 ATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTA 25368584 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || ||||||| ||||| ||||| ||||||| || || ||| Sbjct 25368585 TCAATGGTATCGGAGCTTTCGACCTCCAAAGTAATGGTTTTCCCCGTCAGGGTCTTCACA 25368644 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 25368645 AAAATTTGCAT 25368655 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| | ||| ||| || ||||| |||||||||| || | | Sbjct 25368894 AGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTT 25368953 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||||||||| ||||| || |||| ||| || || | || | ||||| Sbjct 25368954 CCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCT 25369013 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| ||| | | | ||||| | ||| ||||||| || Sbjct 25369014 TTGTCTTGGATTTTTGCTTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAGGGTT 25369073 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || ||||| || ||||| Sbjct 25369074 ATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 25369111 >seq6 Length=137147148 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 || ||||| | |||| | || | ||| || ||| ||| |||||||| |||||||| Sbjct 34075017 TCACCGCCACGGAGCCTGAGAACAAGATGGAGGGTGGACTCCTTTTGAATGTTGTAATCG 34075076 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 | ||| | || |||| || | |||||| || ||||| || || ||||| || |||| Sbjct 34075077 GCCAGAGTGCGTCCGTCCTCAAGCTGCTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGT 34075136 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| ||||| ||||| |||||| || || | | | || || || |||| Sbjct 34075137 GGAATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCAATAGTATCAGAACTCTCC 34075196 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | ||| ||||| || || || | ||| || || |||||||||||| Sbjct 34075197 ACCTCTAACGTTATCGTCTTCCCGGTTAGAGTCTTCACGAAAATCTGCATC 34075247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| |||||||| |||||||| | || | ||| | || || | ||| Sbjct 34075500 TGGAGCGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTGCGACCATCCTCTAGCTGT 34075559 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || |||||||| ||||| | |||| ||| || ||||| |||||| Sbjct 34075560 TTCCCTGCGAAGATGAGTCGCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGAATCTTG 34075619 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | || ||||||| || ||||| ||||| || Sbjct 34075620 GCCTTCACGTTGTCGATTGTGTCGGAGGATTCAACCTCCAGAGTGATCGTCTTTCCGGTT 34075679 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || ||||||||||| Sbjct 34075680 AGGGTTTTGACGAAAATCTGCAT 34075702 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || ||||| || || | || | ||| |||| || | |||| Sbjct 34075728 TGGAGCGTGGACTCCTTCTGGATATTATAGTCGGCAAGGGTGCGACCGTCTTCGAGCTGC 34075787 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || |||| || | ||| |||||||| ||||| Sbjct 34075788 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTA 34075847 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||||||||||| |||||||| || || || Sbjct 34075848 GCCTTCACATTGTCAATGGTATCGGAGGACTCCACCTCCAAGGTAATCGTCTTCCCTGTT 34075907 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || || |||||||| Sbjct 34075908 AGGGTTTTCACGAAGATCTGCAT 34075930 >seq5 Length=149900536 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||||||||||| || | | | || ||||||||||| || || || Sbjct 20296910 CTCCTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCTTCCAACTGCTTCCCTGCGAA 20296969 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| || |||| ||| | ||||||||||| |||||| ||| ||| Sbjct 20296970 GATCAACCTCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCTTTGACATT 20297029 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||| | ||||| || || || |||||||| || || Sbjct 20297030 GTCAATGGTGTCGGAGCTCTCCACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTAAC 20297089 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 20297090 AAAAATCTGCAT 20297101 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || ||| ||| ||||| || ||||| || | ||| | || Sbjct 20297340 AGACGCAAGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTGCGG 20297399 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || |||| || ||| || |||| ||||| ||||||| Sbjct 20297400 CCATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTCC 20297459 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | | || || ||||||||| | ||| Sbjct 20297460 TTGTCTTGGATTTTGGCCTTGACATTATCGATGGTGTCAGAGCTCTCCACCTCAAGGGTA 20297519 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || ||||| |||||||| Sbjct 20297520 ATTGTCTTTCCGGTAAGGGTCTTAACAAAGATCTGCAT 20297557 >seq9 Length=147089397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | || || ||| ||| || ||||| |||||||||| Sbjct 145229297 CCTCCCCTGAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 145229238 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | ||||||||| ||||| |||| | || || |||| ||| Sbjct 145229237 AGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTTTGCTGGTCCGGTGGA 145229178 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || |||||| || ||| | | | || || ||||||| Sbjct 145229177 ATGCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCAATTGTGTCGGAGCTCTCCACC 145229118 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || || |||||||||||||| Sbjct 145229117 TCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 145229071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | || || ||| ||| || ||||| || || |||| || | | Sbjct 145229516 AGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCTT 145229457 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| | ||| || |||| || | || ||| Sbjct 145229456 CCATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCC 145229397 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || ||||||||||| || Sbjct 145229396 TTATCCTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAAGGTG 145229337 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || |||||||| || ||||||||||||||| Sbjct 145229336 ATGGTCTTACCGGTCAAAGTCTTCACAAAAATCTGCATC 145229298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935055813004