Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq6 98.7 1e-15 seq4 95.1 1e-14 >seq3 Length=136109863 Score = 107 bits (118), Expect = 2e-18 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| || | || |||||||||| |||||||||| |||| | ||| |||| || | Sbjct 115210794 GGGACTTCGACTATGATTACTTTGGTTTCAAAACCCTGGAGAGGTCCTACCTCTTGAA-G 115210852 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||||| ||| |||| || | || || Sbjct 115210853 GTTCAA-GGAAAGGTTGTGGAAAGGCCCCAGCACATGTTGATGAGGGTTGCTGTTGGAAT 115210911 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGT 75305 ||| ||| ||||| || || | || ||| | ||| ||| |||||| ||| | || Sbjct 115210912 TCACAAGGATGACATAGAATCCG-CTGTCAGAACTTACCACATGATGTCTCAAAGATGGT 115210970 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| || | ||||| || ||||||||||| |||||||| || || Sbjct 115210971 TCACTCATGCTTCCCCAACACTTTTCAATGCTGGAACACCAAGGCCTCA 115211019 Score = 100 bits (110), Expect = 3e-16 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| | ||| || ||||| |||||| | ||| || ||| Sbjct 131893112 CCTGGAACTGGGAAGACCCTTTTGGCCAAGGCGATCGCTGGTGAAGCTGGTGTTCCGTTC 131893053 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | ||| | | | ||||| ||||||||||||||| | ||||| | | || Sbjct 131893052 TTCTCAAT-CTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATCGGTGCTTCACGAGT 131892994 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||| | || | | || || ||| || || ||||| ||| ||||||| || Sbjct 131892993 CCGTGATTTATTCAAGAAGGCTAAAGAGAATGCCCCTTGCATTGTGTTCGTTGATGAAAT 131892934 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||||| || || | ||| | | |||| |||| || ||||| || ||||| Sbjct 131892933 TGATGCTGTTGGGAGACAAAGAGGGACTGGAATTGGT---GGAGGGAATGATGAAAGAGA 131892877 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 ||| ||| | ||||| || | || || |||||||| ||||| | | || ||||| | Sbjct 131892876 ACAGACACTCAATCAGCTTTTGACAGAAATGGATGGGTTTGAGGGTAATACAGGCATCAT 131892817 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || ||||| || ||||| | | || || ||||| Sbjct 131892816 CGTAATTGCAGCTACTAACAGGGCTGACATTCTTGA 131892781 >seq6 Length=137147148 Score = 98.7 bits (108), Expect = 1e-15 Identities = 237/357 (66%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 |||| |||||||||||| | || || | || | ||||| |||||||| || Sbjct 141752 TTGTTGATTTTCTCAAGAACCCTGACAAGTACACCGCTTTGGGTGCTAAGATCCCAAAAG 141693 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 | ||||| | ||| || || || || |||||||| || || || || | || | Sbjct 141692 GGTGTCTTCTGGTGGGGCCACCTGGAACCGGGAAGACCCTTCTGGCTCGGGCGGTTGCCG 141633 Query 175355 GTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 |||| | || || ||| || ||| | || | | || |||||| ||||||||| Sbjct 141632 GTGAGGCCGGAGTACCGTTCTTCTCTTGCGCGGCTTCGGAGTTCGTGGAGCTGTTTGTTG 141573 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 | || ||||| | || | ||| | ||||| | ||| ||| || || | Sbjct 141572 GGGTTGGTGCTTCCCGCGTGAGGGATTTGTTTGAGAAAGCCAAGTCAAAGGCGCCGTGCA 141513 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCC 175532 |||| |||||||||||||||||||| ||||| | ||| | | ||||| | | | || Sbjct 141512 TTGTTTTCATTGATGAGATTGATGCCGTGGGGAGGCAGAGAGGGGCTGGTCTCGGAGGC- 141454 Query 175533 AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || || ||||| || || || ||||| || || | || |||||||||||||| Sbjct 141453 -GGGAACGATGAGAGGGAGCAGACCATTAACCAGCTCTTGACGGAGATGGATGGCTT 141398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || ||||| || ||| | | ||||| || ||||| || || ||||||||||||||| Sbjct 120287734 TCGTTCGCGGAACGCATCGTCGCGTTCGCCTGTGTCGAAGGGATCTTCTTCTCCGGGAGC 120287675 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| | || | |||| |||| ||||| || | |||||||| || |||||| || Sbjct 120287674 TTCTGCTCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCAGGTTTAACCTTCTCGAAC 120287615 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || | || || |||||||| || || ||| Sbjct 120287614 GAGTTGATCTCGCGAGATGAAGGCCTTCAC 120287585 >seq4 Length=133615181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 297/458 (65%), Gaps = 4/458 (1%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | || ||| | || || ||| | ||||| ||||| || Sbjct 21681481 TGATGTTGCTGGGGTGGATGAAGCTAAACAGGACTTTATGGAGGTAGTGGAGTTTCTGAA 21681540 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || ||||| | || ||| || || || ||| | ||||| | || Sbjct 21681541 GAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCGAAAGGAGTTCTTCTTGTTGG 21681600 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || || ||||| || | ||| || || || || ||| || |||||| Sbjct 21681601 TCCTCCAGGAACCGGTAAGACGCTGTTAGCCAAGGCTATTGCAGGGGAAGCAGGTGTCCC 21681660 Query 175371 ATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAG 175430 |||| || ||| | | | ||||| ||||||||||||||||| ||||| | Sbjct 21681661 ATTCTTCTCCATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCG 21681720 Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 ||||| ||| | || | | ||| || ||| || || ||||| || ||||||| Sbjct 21681721 TGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTTTTTGTTGATGA 21681780 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 || ||||| || || | |||| | | |||| | | | | || ||||| || ||| Sbjct 21681781 AATCGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGAGG--AGGGAATGATGAAAGA 21681838 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATT 175608 ||||| || | || ||||| | || || |||||||| || || | | || || || Sbjct 21681839 GAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTCGAGGGTAATACCGGTATC 21681898 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | || ||||| || ||||| | | || || ||||| Sbjct 21681899 ATTGTCATTGCAGCAACTAACAGAGCTGACATTCTTGA 21681936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565513498240