Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 seq6 109 1e-18 seq5 91.5 3e-13 seq1 86.0 1e-11 seq8 84.2 4e-11 >seq3 Length=136109863 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| || || || || | ||| || || | ||| || || || |||||| Sbjct 25368882 ATTCCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCA 25368941 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| ||||| || |||||||||||||| | |||||| || |||||| Sbjct 25368942 GCAAGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCAGGT 25369001 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| ||| ||||| || | ||||| || || Sbjct 25369002 GGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATGGTGTCTGAAGACTCG 25369061 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || |||| ||| || | ||| || ||||| Sbjct 25369062 ACCTCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 25369111 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || || || ||||||||||| | ||| || ||||| ||||| Sbjct 25369110 ATGCCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCT 25369169 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || ||||| || ||||| | ||||||||||| ||| Sbjct 25369170 GCAAGCGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGT 25369229 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || ||| ||| ||||| || | |||||| ||||| Sbjct 25369230 GGAATGCCCTCTTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCC 25369289 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || || || | ||| |||||||| Sbjct 25369290 ACCTCCAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| || | ||||| || |||| ||||||||||| ||||||||||| | || Sbjct 25368473 GATATTATAGTCTGCCAATGTACGACCATCCTCCAATTGTTTGCCAGCAAAGATGAGCCT 25368532 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || || || || || || || || || |||||| || | Sbjct 25368533 CTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTATCAATGGT 25368592 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || ||| || || | |||||||||||| || || | || || | ||| || || Sbjct 25368593 ATCGGAGCTTTCGACCTCCAAAGTAATGGTTTTCCCCGTCAGGGTCTTCACAAAAATTTG 25368652 Query 192534 CAT 192536 ||| Sbjct 25368653 CAT 25368655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/138 (76%), Gaps = 14/138 (10%) Strand=Plus/Plus Query 216231 ATAAATATCTTTATTCTTAATTATATTAAAAGAATTACAatatttgcattttactacctc 216290 |||||||| |||||| || ||||||||||| || || || |||| |||||| || | Sbjct 93510757 ATAAATATTTTTATTTTT--TTATATTAAAATAACTATTATTTTTGAATTTTAATAATTT 93510814 Query 216291 gctcatttatttatat-tatt----tattataaactataa-tattt-ttga-----aata 216338 | ||| ||||||| |||| ||||||| ||||||| ||||| |||| |||| Sbjct 93510815 ATTAATTAGTTTATATCTATTATACTATTATATACTATAAGTATTTATTGAAAAATAATA 93510874 Query 216339 ttaataaatattatataa 216356 |||||| ||||||||||| Sbjct 93510875 TTAATAGATATTATATAA 93510892 >seq6 Length=137147148 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || || ||||| || ||||| ||||| | || |||||||||||| || |||||||||||| Sbjct 34075320 TCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCTTCTTTA 34075379 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || || || || || ||| | || || ||||| || || ||||| ||| Sbjct 34075380 TCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACCTCGAGAGTTATG 34075439 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||| ||||| | ||| |||||||| Sbjct 34075440 GTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 34075474 >seq5 Length=149900536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| | || | ||| || |||||| || || Sbjct 20297100 ATGCCTCCCCTGAGACGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCG 20297159 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || |||||||||||||| || ||||| || || || Sbjct 20297160 GCCAAGGTGCGCCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCCGGG 20297219 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 20297220 GGGATACCTTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGAGCTCTCC 20297279 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| || || | || || | || |||||||| Sbjct 20297280 ACCTCAAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAAATCTGCAT 20297329 Score = 84.2 bits (92), Expect = 4e-11 Identities = 151/208 (73%), Gaps = 22/208 (11%) Strand=Plus/Minus Query 65146 TTATTATAAAAATAAATTTTCAATCAGTATTTGaataatcaaataatatttattctaaat 65205 ||||||||||||||||| | || | || | |||| ||||||| | || ||| | Sbjct 41359256 TTATTATAAAAATAAATAATTAAATAATA----ATTAATTTAATAATAATCATAATAATT 41359201 Query 65206 aattatcttgaata--tat-tctttattt--tta--aatttataatagatattttaatcc 65258 |||||| || |||| ||| | ||||||| ||| |||||||| || ||||| ||| Sbjct 41359200 AATTATATTAAATAATTATATTTTTATTTAATTAATAATTTATATTAATTATTTAAAT-A 41359142 Query 65259 ataatttttgaattatattattagat-ttaatataattcat--atagatataa-aattaa 65314 |||||| ||||| || |||| || |||| ||||| || ||| ||||| |||||| Sbjct 41359141 ATAATT----AATTAAATAATTAAATCATAAT-TAATTTATTAATAATTATAATAATTAA 41359087 Query 65315 ttcgtagtaaataattctattTTAATTT 65342 || | | |||| |||| ||||| |||| Sbjct 41359086 TTAG-ATTAAAAAATTAAATTTTTATTT 41359060 >seq1 Length=137414913 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| ||| ||| | ||||| || |||||||| | ||||| ||| || || Sbjct 128085219 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATTAGCTCATTTGAAAATGTCAAA 128085278 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATAT 49918 ||||||||||||||||||||||||||||| ||||| Sbjct 128085279 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATAT 128085313 >seq8 Length=129606920 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/222 (72%), Gaps = 33/222 (15%) Strand=Plus/Plus Query 65146 TTATTATAAAAATAAATTTTCAATCAGTATTTGaataatcaaataatatttattctaaat 65205 ||||||||||||||||| ||| ||| | || || ||||||| ||||| Sbjct 9756723 TTATTATAAAAATAAAT----AAT---TATATAAAATATAAAATAAT--------TAAAT 9756767 Query 65206 aattatcttgaata--tat-tctttattt--tta--aatttataatagatattttaatcc 65258 |||||| || |||| ||| | ||||||| ||| |||||||| || ||||| ||| Sbjct 9756768 AATTATATTAAATAATTATATTTTTATTTAATTAATAATTTATATTAATTATTTAAAT-T 9756826 Query 65259 ataatttttgaattatattattagatt-taatataattcat--atagatataa-aattaa 65314 |||||| ||||| || |||| ||| |||| ||||| || ||| | ||| |||||| Sbjct 9756827 ATAATT----AATTAAATAATTAAATTATAAT-TAATTTATTAATAATTTTAATAATTAA 9756881 Query 65315 ttcgtagtaaataattctattTTAATTTTAGTGCTATTTAAT 65356 || | | ||||||||| ||||| |||| | | ||| || || Sbjct 9756882 TTAG-ATTAAATAATTAAATTTTTATTTAATTACTAATTTAT 9756922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984473087719800