Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 122 2e-22 seq6 104 4e-17 seq5 87.8 3e-12 >seq3 Length=136109863 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || || || | || | ||| || ||| || |||||| Sbjct 25369338 ATGCCACCTCTCAAACGGAGAACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCT 25369397 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | || || ||||||||||| || ||||| ||||||||| Sbjct 25369398 GCTAGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGT 25369457 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| ||| ||||| || || ||||| ||||| Sbjct 25369458 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTGTCAATGGTGTCTGAGGATTCG 25369517 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || |||||||| ||||| || || || | ||| || ||||| Sbjct 25369518 ACCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAAAATTTGCAT 25369567 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||||| || || | ||| || || | ||| || ||| || ||||| Sbjct 25368882 ATTCCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCA 25368941 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| || ||||| || ||||||||||| || | |||||| |||||||| Sbjct 25368942 GC-AAGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCAGG 25369000 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || || ||||| ||||| ||||| ||| ||||| || || ||||| || || Sbjct 25369001 TGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATGGTGTCTGAAGACTC 25369060 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||| ||| || | || || ||||| Sbjct 25369061 GACCTCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 25369111 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || ||||||||||| | ||| || |||||| |||||| Sbjct 25369110 ATGCCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCT 25369169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | || ||||| || || || | |||||||| || ||| Sbjct 25369170 GCAAGCGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGT 25369229 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || ||| ||| ||||| || |||||||| ||||| Sbjct 25369230 GGAATGCCCTCTTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCC 25369289 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || || || || | || |||||||| Sbjct 25369290 ACCTCCAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| || || ||||| | || || |||||||| || |||||||||||| Sbjct 25369641 TCTTCAAGTTGTTTTCCGGCGAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCTTTA 25369700 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || |||||| || ||||| || ||| || || || || ||| Sbjct 25369701 TCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACCTCAAGGGTGATG 25369760 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| | ||| || ||||| Sbjct 25369761 GTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 25369795 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/138 (76%), Gaps = 14/138 (10%) Strand=Plus/Plus Query 195796 ATAAATGTCTTTATTCTTAATTATATTAAAAGAATTACAatatttgcattttaatacctc 195855 |||||| | |||||| || ||||||||||| || || || |||| ||||||||| | Sbjct 93510757 ATAAATATTTTTATTTTT--TTATATTAAAATAACTATTATTTTTGAATTTTAATAATTT 93510814 Query 195856 gctcatttatttatat-tatt----tattataaactataa-tattt-ttga-----aata 195903 | ||| ||||||| |||| ||||||| ||||||| ||||| |||| |||| Sbjct 93510815 ATTAATTAGTTTATATCTATTATACTATTATATACTATAAGTATTTATTGAAAAATAATA 93510874 Query 195904 ttaataaatattatataa 195921 |||||| ||||||||||| Sbjct 93510875 TTAATAGATATTATATAA 93510892 >seq6 Length=137147148 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || ||||| || ||||| || || | || |||||| ||||| || |||||||||| Sbjct 34075318 CGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCTTCTT 34075377 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| || || || || || ||| || || || ||||| || || ||||| | Sbjct 34075378 TATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACCTCGAGAGTTA 34075437 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || |||| ||||| | || |||||||| Sbjct 34075438 TGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 34075474 >seq5 Length=149900536 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || || ||||| ||||| || || || ||||| || ||||| || Sbjct 20297184 TGCTTACCAGCAAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCTTGGATC 20297243 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| |||||| || || || || || || || ||||| |||||||| || Sbjct 20297244 TTAGCTTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCAAGAGTGATGGTTTTCCCG 20297303 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| |||||||| Sbjct 20297304 GTGAGGGTCTTCACGAAAATCTGCAT 20297329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905129799818400