Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 147 6e-30 seq5 145 2e-29 seq3 131 5e-25 seq9 120 9e-22 seq6 95.1 4e-14 seq8 87.8 5e-12 >seq4 Length=133615181 Score = 147 bits (162), Expect = 6e-30 Identities = 341/507 (67%), Gaps = 14/507 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||||| |||| | ||| || | ||| | || || |||||||| |||||| Sbjct 21681969 CTATCAAACCGTCCAGGTCTCAATAAAGCAGAGTCAAGAATGTCAGCTCTGTTAGTTGCT 21681910 Query 288910 GCCAATACAACAATAGATTCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || | |||| ||| |||| | || || |||||||| ||| |||| ||| Sbjct 21681909 GCAATGACAATGATAC---CGGTATTACCCTCGAACCCATCCATTTCTGTCAAAAGTTGG 21681853 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || || || ||||| ||||||||||| |||| ||| | | | ||| || Sbjct 21681852 TTGAGGGTCTGTTCTCTTTCATCATTCCCTCCTCC--AATTCC---AGTACCTCTTTGCC 21681798 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || ||||||||||| ||||| |||| |||| | || |||| ||| | | | || | Sbjct 21681797 TT-CCAACAGCATCGATTTCATCAACAAAAACAATGCAAGGAGCATTCTCTTTGGCCTTC 21681739 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| || | ||||| || || |||| ||||||| |||| || ||||| |||||| Sbjct 21681738 TTGAATAAATCACGAACACGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAA 21681679 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | | || | ||||| ||| |||||| ||||| | ||| | || | || || Sbjct 21681678 CCTGAGA-TGGAGAAGAATGGGACACCTGCTTCCCCTGCAATAGCCTTGGCTAACAGCGT 21681620 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 |||||| ||||| || || || | | |||||||| || |||| |||||| ||| Sbjct 21681619 CTTACCGGTTCCTGGAGGACCAACAAGAAGAACTCCTTTCGGTATGCGAGCCCCAACAGC 21681560 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | ||||||| |||| | ||| || || | ||| || || | ||| || || Sbjct 21681559 AGTGAACCTCTCAGGCTTCTTCAGAAACTCCACTACCTCCATAAAGTCCTGTTTAGCTTC 21681500 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 ||| || || |||||| |||| || Sbjct 21681499 ATCCACCCCAGCAACATCATCAAATGT 21681473 >seq5 Length=149900536 Score = 145 bits (160), Expect = 2e-29 Identities = 237/339 (70%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || || ||| |||||| || ||| |||||||||||| ||| | | || | | Sbjct 3952739 TTCCTAACTGTCCCATCATACTTAACCATGATGTCTTCCATAGCCTTCACAAGCCGTCTC 3952798 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || || |||||| ||| || || || || |||||||| ||||| | ||||| ||| Sbjct 3952799 TGGATGTACCCAGTTTCAGAAGTCTTCACTGCAGTATCAATAAGACCTTCTCGACCTCCC 3952858 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || |||||||| || | ||| | || || || | | | | ||| |||| || || Sbjct 3952859 ATGGCATGGAAAAAGAACTCCTGAGGGGTAAGTCCACGGAGATATGAGTTCTCCACAAAG 3952918 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATA 302777 ||||| || ||| || || || |||||||| ||||| |||| | ||| | | Sbjct 3952919 CCACGACTTTCAGGCCCATAATCATCTTTTGTAAAGTGGGGCAGTGTCC-GATCTATAAA 3952977 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||| || | ||| || ||||| ||||||||||||| || | | ||||||| || Sbjct 3952978 CCCATATGGAATTCTCTTCCCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGAGA 3953037 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| | | ||| || |||||||| || | ||||| Sbjct 3953038 TATATTGATAAAACTTCCTTTGGAGCCTGCTGTGACCAT 3953076 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 10572659 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 10572718 Query 409011 TAGAACAtttttttA 409025 || |||||||||| Sbjct 10572719 GGGACCATTTTTTTA 10572733 >seq3 Length=136109863 Score = 131 bits (144), Expect = 5e-25 Identities = 285/422 (68%), Gaps = 16/422 (4%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| ||||| ||||| ||||| ||||||||||| Sbjct 131892834 CTCAAACCCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTC-- 131892891 Query 288996 ACCTCTTGAATCACC----CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAA 289051 |||| |||| | | || ||| ||| | | ||||||||||||||||| |||| Sbjct 131892892 -CCTC------CACCAATTCCAGTCCCTC-TTTGTCTCCCAACAGCATCAATTTCATCAA 131892943 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 ||| | | || || | ||| | | | || | ||||| || | || || || | Sbjct 131892944 CGAACACAATGCAAGGGGCATTCTCTTTAGCCTTCTTGAATAAATCACGGACTCGTGAAG 131893003 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACA 289170 | || | ||||||| |||| || ||||| |||||| | || | |||| | ||| | ||| Sbjct 131893004 CACCGATACCAACAAACATCTCAACAAACTCAGAACCTGAGA-TTGAGAAGAACGGAACA 131893062 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||| || || | ||| | |||| ||| ||||| || |||||||| ||||| | Sbjct 131893063 CCAGCTTCACCAGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGGAGGTCCAACA 131893122 Query 289231 AATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 | ||||| |||||||||| || ||| ||| | | | ||||| |||| | | Sbjct 131893123 AGAAGAACACCCTTTGGTATGCGAGCTCCAACAGCAGTGAACCTTTCAGGCTTCTTCAGA 131893182 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAA 289350 || || || | ||| || || | || || ||||| || || |||||| |||| Sbjct 131893183 AACTCCACCACCTCCATAAAATCCTGCTTAGCTTCATCCACCCCAGCAACATCATCAAAC 131893242 Query 289351 GT 289352 || Sbjct 131893243 GT 131893244 Score = 125 bits (138), Expect = 2e-23 Identities = 217/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | || | || || || |||||| ||| || || Sbjct 13690689 CATAATATCCTCCATAGCCTTCACAAGCCGCCTTTGGATGTATCCAGTTTCAGAGGTCTT 13690748 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| | ||| | | ||| ||||| |||||||| || | ||||| || Sbjct 13690749 CACTGCAGTATCAATAATACCTTCCCTACCTCCCATGGCATGGAAAAAGAACTCTTGTGG 13690808 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | || | | ||| |||| || || || || || ||| || || Sbjct 13690809 GGTCAGCCCTCGAAGATACGAGTTCTCCACAAAGCCTCGGCTTTCAGGCCCATAATCATC 13690868 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 || |||||||||||||| ||||| | | | | | || |||| || ||||| || |||| Sbjct 13690869 TTTTGTAAAGTGTGGCAGTGTCCTATCTATGA-ACCCAAATGGAATTCGCTTGCCTTCAA 13690927 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | ||||| || || || || | | ||||||| || ||||| | | ||| || ||||| | Sbjct 13690928 CATTCTGTTGACCAAGACAAGCAGTCATCTGAGATATATTGATAAAACTTCCTTTGGAAC 13690987 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 13690988 CAGCTGTCACCAT 13691000 Score = 116 bits (128), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| |||||||| | |||||| |||| || Sbjct 115211390 TACCTTTCCTCTTGCCTCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGTA 115211331 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| |||||||||||| || ||||| ||||| || || | |||| | | Sbjct 115211330 GCATAGGAACAATACCATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCAC 115211271 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || |||| | | ||||| || |||| |||| || ||| || |||| Sbjct 115211270 GAATGTTGTGAACAGAAACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCT 115211211 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||||| | || || || ||| |||||||| ||| Sbjct 115211210 TCAAAGTATCATATATTCCCTCTATACTATCATCTTTCAT 115211171 Score = 113 bits (124), Expect = 1e-19 Identities = 222/320 (69%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| |||||||| || || | || || | | || || || || | Sbjct 4785814 ACCAATTGCATCAATCTCGTCAATAAATATAATACTAGGGGCACACTGCCTTGC--TTCC 4785871 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || | |||||| | |||| ||||| ||||||| |||| || | ||| || ||| Sbjct 4785872 TGAAACAAGTTTCTTACCCTAGATGGTCCAACACCAACAAACATCTCCATAAAATCTGAA 4785931 Query 289147 GCGGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | |||| | ||| ||| || ||| | ||| |||||| ||| | || | ||| || Sbjct 4785932 CCAGATA-TCGAAAGAAATGGAACACCAGATTCCCCTGCTGTTGCTTTTGCTAAAAGGGT 4785990 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 || ||||| ||||| || || | | ||| | ||||| || | ||||||||| || Sbjct 4785991 TTTTCCTGTGCCAGGAGGACCAACCAGGAGAGCACCCTTGGGGATTTTTGCCCCT--AGT 4786048 Query 289266 -CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| |||||||| ||| |||| | || | |||| ||| || ||| | |||||| Sbjct 4786049 TCTTCATATTTCTTTGGGTTCTTAAGGAAGTGGACAAACTCCATAATTTCTTGCTTTGCC 4786108 Query 289324 TCATCACATCCTGCTACATC 289343 ||||| || || || ||||| Sbjct 4786109 TCATCGCAACCAGCAACATC 4786128 >seq9 Length=147089397 Score = 120 bits (132), Expect = 9e-22 Identities = 216/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | || | || || || |||||| ||| || || Sbjct 125580732 CATAATATCCTCCATAGCCTTCACAAGCCGCCTTTGGATGTATCCAGTTTCAGAGGTCTT 125580791 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| | ||| | | ||| ||||| |||||||| || | ||||| || Sbjct 125580792 CACTGCAGTATCAATAACACCTTCCCTACCTCCCATGGCATGGAAAAAGAACTCTTGTGG 125580851 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | || | | ||| |||| || || || || || ||| || || Sbjct 125580852 GGTCAGCCCTCGAAGATACGAGTTCTCCACAAAGCCTCGGCTTTCAGGCCCATAATCATC 125580911 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 || |||||||||||||| ||||| | | | | | || |||| || ||||| || |||| Sbjct 125580912 TTTTGTAAAGTGTGGCAGTGTCCTATCTATGA-ACCCAAATGGAATTCGCTTGCCTTCAA 125580970 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | ||||| || || || || | | ||||||| || || || | | ||| || ||||| | Sbjct 125580971 CATTCTGTTGACCAAGACAAGCAGTCATCTGAGATATGTTGATAAAACTTCCTTTGGAAC 125581030 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 125581031 CAGCTGTCACCAT 125581043 >seq6 Length=137147148 Score = 95.1 bits (104), Expect = 4e-14 Identities = 217/324 (67%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || |||||||| || |||||||||| | ||||| | ||| | || | || Sbjct 141482 CCCACGGCATCAATCTCATCAATGAAAACAATGCACGGCGCCTTTGACTTGGCTTTCTCA 141541 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || || || ||||| || |||| |||||| ||| || || || || ||||| Sbjct 141542 AACAAATCCCTCACGCGGGAAGCACCAACCCCAACAAACAGCTCCACGAACTCCGAAGCC 141601 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | || | ||| | ||| || || || || || |||| |||||||| ||||| Sbjct 141602 GCG-CAAGAGAAGAACGGTACTCCGGCCTCACCGGCAACCGCCCGAGCCAGAAGGGTCTT 141660 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || ||||||||||| ||| | | ||| || ||||| | || || || || | Sbjct 141661 CCCGGTTCCAGGTGGCCCCACCAGAAGACACCCTTTTGGGATCTTAGCACCCAAAGCGGT 141720 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 || || |||||| |||| | ||| || |||| ||||| | ||| || || | || Sbjct 141721 GTACTTGTCAGGGTTCTTGAGAAAATCAACAACTTCCTGCAATTCCAGCTTGGCTTGGTC 141780 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||||| || ||||| || || Sbjct 141781 AGCGCCTGCGACGTCAGCGAAGGT 141804 >seq8 Length=129606920 Score = 87.8 bits (96), Expect = 5e-12 Identities = 217/321 (68%), Gaps = 10/321 (3%) Strand=Plus/Minus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| | |||||||| || |||||||| | | || |||| | ||| || || || Sbjct 2537252 TACCTATTGCATCAATCTCATCAATGAATACTATACTTGGAGCACATTGCCTTGC--TTC 2537195 Query 289088 CA--AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | || || ||| || | || | ||||| ||||||| |||| || | ||| ||||| Sbjct 2537194 CTGGAACAAGCTTCTCACCCTTGAGGGTCCAACACCAACAAACATCTCCAGAAAATCAGA 2537135 Query 289146 AGCGGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| | || ||| | ||| | ||| ||||| ||| | || | |||| Sbjct 2537134 ACCAGATA-TAGATAGAAAAGGCACACCGGATTCCCCTGCAGTTGCTTTTGCTAAGAGTG 2537076 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || ||||| || || || || | | ||| | |||||||| | ||| || ||| || Sbjct 2537075 TTTTCCCTGTGCCTGGAGGCCCAACAAGAAGAGCACCCTTTGGAATTTTCGCACCA--AG 2537018 Query 289265 A-CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 ||| |||||||| || ||||||| || | |||| ||| | ||| | ||||| Sbjct 2537017 TTCTTCATATTTCTTTGGATTCTTTAAGAAATGCACAAACTCCATGATTTCTTGCTTTGC 2536958 Query 289323 CTCATCACATCCTGCTACATC 289343 ||||||||| || || ||||| Sbjct 2536957 CTCATCACACCCAGCAACATC 2536937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807266000676