Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq3 100 3e-16 seq5 82.4 7e-11 >seq6 Length=137147148 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | || | || || || ||||| |||||||||||| Sbjct 34075475 GCCGCCGCGAAGACGGAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCGGC 34075534 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || || || ||||| || || |||| || || |||||||||||||| Sbjct 34075535 GAGGGTGCGACCATCCTCTAGCTGTTTCCCTGCGAAGATGAGTCGCTGCTGATCGGGAGG 34075594 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||| || || | | || | ||||| | || ||| || Sbjct 34075595 AATGCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 34075654 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||| ||||| | ||||| ||||| || ||||| Sbjct 34075655 CTCCAGAGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 34075702 >seq3 Length=136109863 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| |||||| | || || || | ||| ||||| || || |||||||||||| Sbjct 25369568 GCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGC 25369627 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || ||||| |||||||| || || | || || | |||||| || ||||| Sbjct 25369628 AAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAAATAAGCCTTTGCTGGTCAGGAGG 25369687 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || |||||||| || |||||| || | | || | || || | ||| || Sbjct 25369688 GATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCAC 25369747 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| ||||| ||||| ||||| |||||||| Sbjct 25369748 CTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 25369795 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 137242 ||| |||| ||||| | ||| || |||| || || || || || ||||||||||| || Sbjct 25369340 GCCACCTCTCAAACGGAGAACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTGC 25369399 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | ||| || || || || || || |||||| | |||| | ||||| || || | Sbjct 25369400 T-AGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTG 25369458 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || || |||||||| ||||| ||| | | || | ||||||| || ||| | Sbjct 25369459 GGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTGTCAATGGTGTCTGAGGATTCGA 25369518 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | || | || || || ||||| || || ||||| |||||||| Sbjct 25369519 CCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAAAATTTGCAT 25369567 >seq5 Length=149900536 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | || | || ||||| || || |||||||| ||| Sbjct 20297786 GCCACCACGGAGACGGAGAACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 20297845 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| |||||||| || || || ||||||||||||||||||| || || Sbjct 20297846 CAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGTGG 20297905 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||||||| || | | || | ||||| | || || Sbjct 20297906 GATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTGTCGGAACTCTCGAC 20297965 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | || || || || |||||||| Sbjct 20297966 CTCGAGAGTGATAGTCTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 20298013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488540653473600