Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq6 113 4e-20 seq4 89.7 4e-13 seq5 86.0 5e-12 seq9 84.2 2e-11 >seq3 Length=136109863 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||| ||||||||||| || || || || ||||||||||| || Sbjct 25369111 TGCCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTG 25369170 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | ||||| ||||| ||||||||| | ||||| | ||||||||| || | Sbjct 25369171 CAAGCGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTG 25369230 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||| ||||| | || | || |||| || ||| | Sbjct 25369231 GAATGCCCTCTTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCCA 25369290 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| | || || |||| ||| || ||||| || ||||| Sbjct 25369291 CCTCCAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 124971758 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 124971699 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || ||||||| || Sbjct 124971698 GCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 124971639 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 124971638 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTT 124971579 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 124971578 TTCACGAAGATCTGCAT 124971562 >seq6 Length=137147148 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||||| | || | ||| ||||| || || || || || ||||| || Sbjct 34075248 CCTCCACGCAACCTAAGAACAAGATGCAACGTCGACTCCTTCTGTATGTTGTAATCAGCA 34075307 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| || | || || || ||| | ||||| ||||||||||| || || Sbjct 34075308 AGCGTCCTCCCGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGG 34075367 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| |||||| |||| | | |||| ||||| | | |||||| Sbjct 34075368 ATTCCTTCTTTATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACC 34075427 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | || ||||| || |||||||||||||| ||||| Sbjct 34075428 TCGAGAGTTATGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 34075474 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | || | || | ||| || || || || ||||| |||||| Sbjct 34075702 TGCCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATATTATAGTCGG 34075761 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| ||||||||||||| || |||||| | ||||||||||| || ||||||| Sbjct 34075762 CAAGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 34075821 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| |||| | || | || || | || || | Sbjct 34075822 GGATGCCTTCCTTGTCTTGGATCTTAGCCTTCACATTGTCAATGGTATCGGAGGACTCCA 34075881 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | || || || || |||||||| ||||| ||||| Sbjct 34075882 CCTCCAAGGTAATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 34075930 >seq4 Length=133615181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| || ||||| || ||| Sbjct 130208353 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 130208412 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| ||| Sbjct 130208413 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTC 130208472 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 130208473 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCCGTTAGGGTT 130208532 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 130208533 TTCACGAAGATCTGCAT 130208549 >seq5 Length=149900536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| |||| ||||| || || ||| Sbjct 20297817 GTGGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCG 20297876 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || ||||| || |||||||| || | || || ||||| || || || Sbjct 20297877 GCGAAGATCAGACGTTGCTGATCCGGTGGGATCCCTTCCTTATCTTGAATTTTTGCCTTG 20297936 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || ||||| |||| || || || || || Sbjct 20297937 ACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATAGTCTTTCCAGTGAGGGTC 20297996 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 20297997 TTCACAAAGATTTGCAT 20298013 >seq9 Length=147089397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || ||| ||| |||| |||||||| || || Sbjct 145228355 GTTGATTCCTTCTGGATGTTGTAGTCAGCGAGTGT-GCGGCCGTCCTCGAGCTGCTTGCC 145228297 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | || || || || ||||| || Sbjct 145228296 GGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCTTGAATCTTTGCCTT 145228237 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||||| | || ||||| ||||| || | || || || || || Sbjct 145228236 AACGTTGTCGATGGTGTCTGAGCTCTCGACTTCGAGAGTGATGGTCTTCCCGGTGAGGGT 145228177 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 145228176 CTTAACGAAGATTTGCAT 145228159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931561969376