Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq6 104 3e-17 seq4 100 4e-16 >seq3 Length=136109863 Score = 107 bits (118), Expect = 2e-18 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| ||||||||||| || ||||| | || ||| ||||| | ||| Sbjct 115211019 TGAGGCCTTGGTGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGA 115210960 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| ||| ||| | ||| || | || || ||||| ||| ||| || || | || Sbjct 115210959 GACATCATGTGGTAAGTTCTGACAG-CGGATTCTATGTCATCCTTGTGAATTCCAACAGC 115210901 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||||| ||| || |||||| | | || | || || || |||| Sbjct 115210900 AACCCTCATCAACATGTGCTGGGGCCTTTCCACAACCTTTCC-TTGAACC-TTCAAGAGG 115210843 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 ||| | |||| |||||||||| |||||||||| || | || |||||| Sbjct 115210842 TAGGACCTCTCCAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCCC 115210794 Score = 100 bits (110), Expect = 4e-16 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | ||||| || | | ||||| Sbjct 131892781 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCAAAC 131892840 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||| | ||| |||||||| |||||||| || | Sbjct 131892841 CCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCC---A 131892897 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | ||| | || || |||||||| ||||||| ||| ||||| || Sbjct 131892898 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCAA 131892957 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || || | | || | ||| || || | | ||||| | ||||||| Sbjct 131892958 GGGGCATTCTCTTTAGCCTTCTTGAATAAATCACGGACTCGTGAAGCACCGATACCAACA 131893017 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | | ||| | || || ||| || ||| | |||||| || Sbjct 131893018 AACATCTCAACAAACTCAGAACCTGAG-ATTGAGAAGAACGGAACACCAGCTTCACCAGC 131893076 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || ||| | |||||||| || || || || Sbjct 131893077 GATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 131893112 >seq6 Length=137147148 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || |||||||| || || | || || |||||| || ||||||||| | || Sbjct 120287585 GTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGCATTAACCC 120287644 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| |||| |||| | || | |||||| ||||||||||||||| || || ||||| Sbjct 120287645 GCGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCGACACA 120287704 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || ||||| | | |||||| ||||| || Sbjct 120287705 GGCGAACGCGACGATGCGTTCCGCGAACGA 120287734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 237/357 (66%), Gaps = 4/357 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| || | | || ||||| || || || |||||||| || | || Sbjct 141398 AAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 141455 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | ||||| | | ||| | ||||| |||||||||||||||||||| ||||| | Sbjct 141456 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 141515 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || ||| ||| | ||||| | ||| | || | ||||| || |||| Sbjct 141516 ACGGCGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCAA 141575 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| |||||| || | | || | ||| || ||| || || | ||||| | Sbjct 141576 CAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCGG 141635 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | || || || || |||||||| || || || || ||| | ||||| ||| Sbjct 141636 CAACCGCCCGAGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCTT 141695 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 |||||||| ||||| | || | || || | |||||||||||| |||| Sbjct 141696 TTGGGATCTTAGCACCCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAACAA 141752 >seq4 Length=133615181 Score = 100 bits (110), Expect = 4e-16 Identities = 298/458 (65%), Gaps = 4/458 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | || || || | | || || Sbjct 21681936 TCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAAC 21681877 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || |||||||| |||||||| || | | Sbjct 21681876 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCTC 21681819 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| || | |||| | || || ||||| || ||||||| || ||||| || | Sbjct 21681818 CAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAAG 21681759 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | || | ||| ||||| | ||||| |||||||||| Sbjct 21681758 GAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAACAA 21681699 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| ||||| | | | ||| || |||||||||| || ||| || || | Sbjct 21681698 ACATCTCAACAAACTCAGAACCTGAGATGGAGAAGAATGGGACACCTGCTTCCCCTGCAA 21681639 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| | || ||||| || || ||||| ||| | ||||| | ||| | Sbjct 21681638 TAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGGAGGACCAACAAGAAGAACTCCTTTCG 21681579 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTT 11900 | || || ||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 21681578 GTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACTACCTCCA 21681519 Query 11901 CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||| || | || | ||| |||||||| Sbjct 21681518 TAAAGTCCTGTTTAGCTTCATCCACCCCAGCAACATCA 21681481 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/406 (66%), Gaps = 16/406 (4%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || ||||| ||||| || | || ||||| | | || || ||||| || |||||| Sbjct 127704974 TTGGTGGCAGCAATGACAATAACACCAGTGTTTCCGGTGAATCCGTCCATTTCAGTGAGT 127705033 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGT 11617 |||||||| | |||||| ||||| |||||||| || |||| |||| || | Sbjct 127705034 AATTGATTCAGTGTTTGCTCTCTTTCATCATTCCCT---CCACCAATGCCAGTACCTCTC 127705090 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || ||||| | |||||||||||| || | ||| || ||| | || Sbjct 127705091 TGCCTCCCTACAGCATCTAACTCATCAATGAACACCAAACACGGCGAATTCGCTTTTGCC 127705150 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | || | || | |||||| ||||| ||||||||||||||||| | || | | Sbjct 127705151 TTGTTGAACAAGTCCCTCACCCTTGAAGCACCTACACCAACAAACATCTCAATGAACTCT 127705210 Query 11738 G----CGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | | |||| | | |||||| ||| | ||| || || || ||| || || Sbjct 127705211 GAACCTGATAGAGAA----AAGAATGGAACACCAGCTTCTCCTGCAATTGCTTTAGCCAG 127705266 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGC-AC 11852 | ||||| || || ||||| || | | |||| | ||| || ||||| || | Sbjct 127705267 CAATGTCTTCCCTGTCCCTGGTGGCCCTACCAAAAGGACCCCTTTCGGAATCTTCGCTCC 127705326 Query 11853 CACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| || | | | |||| ||| ||| | || ||||||||||| Sbjct 127705327 CACGGCCGAGA-ACTTCTCTGGTGTCTTCAAGAACTCCACAATCTC 127705371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027697980800