Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 109 7e-19 seq3 100 4e-16 seq4 91.5 2e-13 >seq6 Length=137147148 Score = 109 bits (120), Expect = 7e-19 Identities = 375/573 (65%), Gaps = 29/573 (5%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 || |||||||| ||||| || |||||||| |||||||| | |||| | || ||||| Sbjct 120287286 TACTCCCCAACACGCTTTTCAAAGAAGTTGGTCTTCCCCTG-AAGCGAAATAAGTTCCAT 120287344 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 ||||||| ||||||| ||| | || || || |||| |||| | || Sbjct 120287345 CCAATCAAAAGGGTTCTGAACATTG---TACACCTT-CTTGCAC-CCAAGCGCCACCAGC 120287399 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 | ||||| | ||| ||||||| |||| | |||| || |||||| || | | Sbjct 120287400 AACCGATCTGCAACGAACTCAATATACTGACTCATCAGGTCTCCGTTCATTCCTACCAAC 120287459 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || || |||||||| | | ||| || |||| || ||||| || ||| |||||| Sbjct 120287460 GCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCTATATCCACGGCGTCCTTCACGATC 120287519 Query 129962 GCGTGAATGGTCTCCGT-GCCAGGTCTATTGCGCA-AAGTCTTGAAGAGTTC--CACG-- 130015 | | | |||| | ||| | | || | || ||| ||||| | || | Sbjct 120287520 CCCTTCACACGCTCCTCAGGCAGCT-TCTTTCTCAGAAG------AGAGTACAGCAAGCA 120287572 Query 130016 -GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 || || || ||| || || || || || ||||| | || ||||||||| | ||| Sbjct 120287573 CGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACC 120287632 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| | || ||||| |||| ||| || |||| || || || ||||||||||| Sbjct 120287633 TGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGAT 120287692 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||| || ||||| |||||||| | || || || || || || || ||| | Sbjct 120287693 CCCTTCGACACAGGCGAACGCGACGATGCGTTCCGCGAACGATTCTGA---GCCATCGAT 120287749 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 ||| | ||||||| || || |||| | || || ||||||| || || | || Sbjct 120287750 CCATCGTAGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAATTGCGTGGAA 120287809 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 ||| ||||| ||||||| ||||||||||| Sbjct 120287810 GAGACGATTCTTCTCTGATGAGTCTTTGATGTA 120287842 Score = 93.3 bits (102), Expect = 5e-14 Identities = 271/413 (66%), Gaps = 16/413 (4%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 |||||||||||||| |||||||| || || ||||| || || | ||||| ||| | || Sbjct 141398 AAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 141455 Query 14213 ATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | ||| || | | ||| | || ||||| ||||| ||||| |||||||| || | Sbjct 141456 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 141515 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | ||| || ||| ||||| | ||| | ||| | ||||| || || Sbjct 141516 ACGG-CGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCA 141574 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||||| |||||| || | | || | || || ||| || || | ||||| Sbjct 141575 ACAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCG 141634 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCA 14449 || | || || || || ||||||||||| || || ||| ||| | ||||| || Sbjct 141635 GCAACCGCCCGAGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCT 141694 Query 14450 CGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-----TCAGGTTGTTTAAGGAAGTCCA 14504 ||||||| | |||| |||||| | || ||||| | || || || || | Sbjct 141695 TTTGGGATCTTAGCAC-----CCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAA 141749 Query 14505 CGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCACTGAAG 14557 | | ||| | |||||| ||| || ||| |||| | |||||| |||| Sbjct 141750 CAACTTCCTGCAATTCCAGCTTGGCTTGGTCAGCGCCTGCGACGTCAGCGAAG 141802 >seq3 Length=136109863 Score = 100 bits (110), Expect = 4e-16 Identities = 229/339 (68%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || ||| | ||| || || || || || | |||||| || | ||||| Sbjct 131892780 GTCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCAAA 131892839 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC---AGG 14211 |||||||| || ||||| || ||||||| || ||||| | |||||||||| | | Sbjct 131892840 CCCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCCACC 131892899 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 || ||| | | || ||| | || || || ||||||||||| | ||| || || || Sbjct 131892900 AATTCCAGTCCCTCT---TTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCA 131892956 Query 14272 TGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||| || || |||| || | ||| || |||| ||||||| ||| Sbjct 131892957 AGGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACGGACTCGTGAAGCACCGATACCA 131893014 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 ||||||||||| ||||| | | | | | |||| || ||| || || || |||||| Sbjct 131893015 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCACC 131893073 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||| || ||| | ||||||||||| || || || Sbjct 131893074 AGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 131893112 >seq4 Length=133615181 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/256 (69%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || ||| | ||| || || || ||||||| ||| || || | || || Sbjct 21681937 GTCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAA 21681878 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | | Sbjct 21681877 CCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCT 21681820 Query 14215 ACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | | || | || | |||| | || || || || |||||||| | ||||| || || Sbjct 21681819 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAA 21681760 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || || | ||||| ||||| | Sbjct 21681759 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAA 21681702 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 21681701 CAAACATCTCAACAAA 21681686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430963718880