Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq6 116 4e-21 seq3 107 2e-18 >seq4 Length=133615181 Score = 131 bits (144), Expect = 2e-25 Identities = 282/415 (68%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || ||||||| ||||| || | | || || Sbjct 21681936 TCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAAC 21681877 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || | | Sbjct 21681876 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCTC 21681819 Query 9677 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 | | |||| || | |||| |||| || ||||| || ||||||| || || ||||| | Sbjct 21681818 CAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAAG 21681759 Query 9735 GTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 | ||| || || |||| || | ||| || ||||| || || |||||||| Sbjct 21681758 GAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAAC 21681701 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || ||| |||||| | ||| || | Sbjct 21681700 AAACATCTCAACAAACTCAGAACCTG-AGATGGAGAAGAATGGGACACCTGCTTCCCCTG 21681642 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| | || |||||||| || ||||| ||| | || || | ||| Sbjct 21681641 CAATAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGGAGGACCAACAAGAAGAACTCCTT 21681582 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 21681581 TCGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 21681527 >seq6 Length=137147148 Score = 116 bits (128), Expect = 4e-21 Identities = 249/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| ||||| || |||||||| || || |||| ||||| ||| | || Sbjct 141398 AAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 141455 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | ||||| | | ||| | |||||||||||||||||||||||||| || |||| Sbjct 141456 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 141515 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 | || ||| || ||||| | ||||| || || || || || |||| Sbjct 141516 ACGGCGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCAA 141575 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851 |||||| |||||| || | | || | || || ||| || || | ||||| | Sbjct 141576 CAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCGG 141635 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 ||| || || || ||||| ||||| || || || || ||| | || || ||| Sbjct 141636 CAACCGCCCGAGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCTT 141695 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 ||| ||||| || || | ||| | ||||| | ||| |||||||| |||| || Sbjct 141696 TTGGGATCTTAGCACCCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAACAACTT 141755 Query 9972 CTTCCAATTC 9981 | | |||||| Sbjct 141756 CCTGCAATTC 141765 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||||| | ||||| | || || | || ||||| || | | |||||||| || Sbjct 120287824 GAGAAGAATCGTCTCTTCCACGCAATTGAGACCGTTCCTTGCGTAAAGAAGAAAGCCGAG 120287765 Query 94762 TGGGC--TATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 ||||| || || ||| | ||| | || ||||| || || || || |||| Sbjct 120287764 TGGGCCCTACGA--TGGATCGATGGCTCAGAATCGTTC----GCGGAACGCATCGTCGCG 120287711 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 || || ||||| || || ||||||||||| || ||||||| | || | |||||| || Sbjct 120287710 TTCGCCTGTGTCGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCGATATTTTGGCTGAAA 120287651 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||| || | ||||||||| | |||||| |||||| | ||||| || || || || Sbjct 120287650 AAGCGCGGGTTAATGCCAGGTTTAACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGC 120287591 Query 94939 CTCCAC 94944 || ||| Sbjct 120287590 CTTCAC 120287585 >seq3 Length=136109863 Score = 107 bits (118), Expect = 2e-18 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 104195 || |||| ||||| || ||| |||||| |||||||||| |||| | ||| |||| || Sbjct 115210793 AGGGACTTCGACTATGATTACTTTGGTTTCAAAACCCTGGAGAGGTCCTACCTCTTGAA- 115210851 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | | ||| |||||| || ||| ||||||| ||| | || || | || | Sbjct 115210852 GGTTCAAGGAAAGGTTG-TGGAAAGGCCCCAGCACATGTTGATGAGGGTTGCTGTTGGAA 115210910 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATG 104314 |||| ||| ||||| || || | || ||| | ||| ||| |||||| ||| | | Sbjct 115210911 TTCACAAGGATGACATAGAATCCG-CTGTCAGAACTTACCACATGATGTCTCAAAGATGG 115210969 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 |||| ||| || | ||||| || ||||||||||| |||||||| || ||| Sbjct 115210970 TTCACTCATGCTTCCCCAACACTTTTCAATGCTGGAACACCAAGGCCTCAA 115211020 Score = 107 bits (118), Expect = 2e-18 Identities = 230/338 (68%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || || || | || ||||| | | ||||| Sbjct 131892781 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCAAAC 131892840 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| || || | || ||||| | |||||||||| || | Sbjct 131892841 CCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 131892897 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | ||| | || || |||||||| ||||||| ||| || ||||| Sbjct 131892898 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCAA 131892957 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || ||| |||| || | ||| || || || || || | ||||| Sbjct 131892958 GGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACGGACTCGTGAAGCACCGATACCAA 131893015 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | |||| || ||| || ||| || |||||| Sbjct 131893016 CAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCACCA 131893074 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || ||| | ||| ||||| || || || || Sbjct 131893075 GCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 131893112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256804663520