Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 seq3 93.3 5e-14 seq9 91.5 2e-13 seq2 86.0 7e-12 >seq6 Length=137147148 Score = 159 bits (176), Expect = 4e-34 Identities = 567/870 (65%), Gaps = 26/870 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||||||||| |||||||||||||| | | ||| || |||||| Sbjct 120287286 TACTCCCCAACACGCTTTTCAAAGAAGTTGGTCTTCCCCTGAAGCGAAATAAGTTCCATC 120287345 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGGCGA 74582 || || |||||||||| || ||| | ||| ||||| | ||| | ||| Sbjct 120287346 CAATCAAAAGGGTTCTGAACATTGTACACCTTCTTGCACCCAAGCGCCACCAGCAACCGA 120287405 Query 74583 TCCGCCACAAATTGAATGTACTGCGTCATT---TCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || | ||| ||||| |||| ||||| | ||| || | | | Sbjct 120287406 TCTGCAACGAACTCAATATACTGACTCATCAGGTCTCCG---TTCATTCCTACCAACGCG 120287462 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC--CATTGGACAATC- 74696 ||||| || || ||| | |||||| ||||| | || || | | | || || ||| Sbjct 120287463 CACGGAAGCGCGTCGCACACAAACTCCCTCTCTATATC-CACGGCGTCCTTC-ACGATCC 120287520 Query 74697 --TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGT-CACGGCA 74753 || | || | ||| ||| | ||||| ||||||| ||| |||| | Sbjct 120287521 CCTTCACACGCTCCTC---AGGCAGCTTCTTTCTCAGAAGAGAGTACAGCAAGCACGCGA 120287577 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || | | || ||||||||||| ||||| || ||||| || | | || ||| Sbjct 120287578 AATCGCAG-TGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGC 120287636 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || | || ||||| |||| |||||| || | |||||| || ||||||||| ||| Sbjct 120287637 ATTAACCCGCGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCT 120287696 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTC 74933 |||||||| || || ||||| | ||||| |||||||| | | | | ||||| Sbjct 120287697 TCGACACAGGCGAACGCGACGATGCGTTCCGCGAACGATTCTGAGCCATCGATCCATCGT 120287756 Query 74934 TGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTT 74993 | ||||| || ||||| || || ||| || || || || || |||||||| | Sbjct 120287757 AGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAATTGCGTGGAAGAGACGA 120287816 Query 74994 GCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 ||||||| | || |||| | | || | | || |||| |||| || || Sbjct 120287817 TTCTTCTCTGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTGTACATCTCTGAGTGG 120287876 Query 75054 ATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 || |||| ||| ||| |||| | ||||||| | || ||||| | | ||| || | Sbjct 120287877 ATGTTCTCGATTG--CGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGAGACCTGAACCT 120287934 Query 75112 CCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAA 75169 |||| || || ||| | ||| |||||||| ||||||||| || || |||||||| || Sbjct 120287935 CCTTCATG-AACCTTC-CGGCGAGATTCTCCAGGACGATGCCATCGGATGCGGCGAAGAA 120287992 Query 75170 AGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAG 75229 || || || |||||||||||||||| |||| ||||| ||||| | || Sbjct 120287993 GGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTCCCAGTGGCGGAG 120288052 Query 75230 GTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAA 75289 ||| || | | |||| ||||| | |||||||| | ||| || ||||||| Sbjct 120288053 GTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCTTTCTTGTACAT 120288112 Query 75290 AGACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||| | |||||||| | |||||| || Sbjct 120288113 TTCCCATATCTCAGGGTATTGGATTGGGAA 120288142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1284245 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1284304 Query 79684 TGAGCTACGAAAGCAAAAGGG 79704 |||||||||| |||| | ||| Sbjct 1284305 TGAGCTACGAGAGCACATGGG 1284325 >seq3 Length=136109863 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 780809 TGCTTTCGTTGAGAATCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 780868 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 780869 TGAGCTACGAAAGCAA 780884 >seq9 Length=147089397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 140787487 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 140787546 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 140787547 TGAGCTACGAAAGCA 140787561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 140794811 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 140794870 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 140794871 TGAGCTACGAAAGCA 140794885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||| ||| ||||| Sbjct 140788194 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGTTCTAACCAAC 140788253 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 140788254 TGAGCTACGAAAGCA 140788268 >seq2 Length=108997779 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 105457030 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 105456971 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 105456970 TGAGCTATGAAAGC 105456957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212251570400