Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 seq3 86.0 4e-12 >seq5 Length=149900536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || || ||||| || ||| || | || ||||| || || Sbjct 20298013 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAGACTATCACTCTCGAGGTCGAGAGTTCC 20297954 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| ||||| |||||| || || ||||| | || || Sbjct 20297953 GAC-----ACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATCCCACCGG 20297899 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | || || |||||||| ||| | || |||| |||| |||| |||| | Sbjct 20297898 ATCAGCAACGTCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCCGACT 20297839 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || || ||| | || | ||| | ||| | ||||| ||| Sbjct 20297838 ACAACATCCAGAAGGAATCCACCCTCCACCTCGTTCTCCGTCTCCGTGGTGGC 20297786 >seq3 Length=136109863 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || || |||||| ||||| | || ||||||||| || Sbjct 25368655 ATGCAAATTTTTGTGAAGACCCTGACGGGGAAAACCATTACTTTGGAGGTCGAAAGCTCC 25368596 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || || || || ||||| || ||| |||| ||| | Sbjct 25368595 GATACCATTGATAAT--GTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGATC 25368538 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||||||||||| || | || | ||| | || || | Sbjct 25368537 AGCAGAGGCTCATCTTTGCTGGCAAACAATTGGAGGATGGTCGTACATTGGCAGACTATA 25368478 Query 27968 ACATCCAAAAAGA 27980 | |||||||| || Sbjct 25368477 ATATCCAAAAGGA 25368465 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || || || ||||| || || || || | || || || || | Sbjct 125684372 AATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACAATCACCCTGGAAGTTGAGAGTTC 125684313 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||| || ||||| || || |||| ||| Sbjct 125684312 GGACACCATCGATAAT--GTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGAC 125684255 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||| ||||| || | || |||| |||| |||| | |||||| Sbjct 125684254 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGCACCTTGGCTGATTAC 125684195 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || |||| | || | || |||||| | ||||| || Sbjct 125684194 AACATCCAAAAGGAATCCACTCTCCACCTTGTGTTGCGTCTCCGTGGTGG 125684145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860023283996