Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 9e-16 seq9 95.1 1e-14 seq4 95.1 1e-14 seq6 91.5 1e-13 >seq3 Length=136109863 Score = 98.7 bits (108), Expect = 9e-16 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| |||||||| || | |||||| || || ||| || || | Sbjct 25369554 ACGAAAATTTG--CATGCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCT 25369611 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||||||||| |||| | || ||||| ||||| || || || ||||| | Sbjct 25369612 GAATGTTGTAATCGGCAAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAAATAAGCC 25369671 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||| | || | | ||||| ||| ||||| |||| | | | | Sbjct 25369672 TTTGCTGGTCAGGAGGGATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTG 25369731 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 ||||| ||||| || | ||||| | || ||||||| ||||| || ||||||| Sbjct 25369732 TATCGGAACTTTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTT 25369791 Query 39281 GCATCT 39286 |||||| Sbjct 25369792 GCATCT 25369797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 124971764 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 124971705 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | || | || || |||||| ||| || Sbjct 124971704 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTG 124971645 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || ||| |||||||| || | ||||| | || ||||| Sbjct 124971644 GCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGT 124971586 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || ||||| || ||||| ||||||||| || Sbjct 124971585 TAGGGTTTTCACGAAGATCTGCATCTTTGCG 124971555 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || | ||| | ||| ||| || || || || ||||| ||||| || | | | Sbjct 25368897 CGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCA 25368956 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || | ||| || || ||||| ||||| | ||||||||| |||||| | | |||||| Sbjct 25368957 TCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCAGGTGGG-ATACCCTCTTT 25369015 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| | | | || || ||||| || |||| || || Sbjct 25369016 GTCTTGGATTTTTGCTTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAGGGTTAT 25369075 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||||||||| Sbjct 25369076 TGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 25369111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||||| ||| ||| || || ||||| ||||| ||||| || | | | Sbjct 25369125 CGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCAAGCGTCCTTCCA 25369184 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || || || || || | ||| || || | || | || ||||||| Sbjct 25369185 TCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTGGAATGCCCTCTTTG 25369244 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| || || ||| | | | | ||||| || ||||| |||| || || Sbjct 25369245 TCCTGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCCACCTCCAGTGTTATG 25369304 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || ||||| || ||||| Sbjct 25369305 GTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 >seq9 Length=147089397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| ||| ||||| |||||||||||||| || || || | Sbjct 145228601 CGCAAGACCAAGTGGAGTGTGGACTCCTTTTGGATATTATAATCGGCGAGGGTGCGGCCA 145228542 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || || | |||||| || | || | || || ||| Sbjct 145228541 TCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTG 145228482 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| || |||| ||| | | | |||||| ||| || || | ||||| Sbjct 145228481 TCTTGGATCTTGGCCTTGA-CGTTGTCGATTGTATCGGAGCTCTCGACCTCAAGAGTGAT 145228423 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || ||||||||||| ||||| Sbjct 145228422 GGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCAT 145228387 >seq4 Length=133615181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 130208347 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 130208406 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | || | || || |||||| ||| | | Sbjct 130208407 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATCTT 130208465 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | | ||| | | | || ||| |||||||| |||| ||||| | || ||||| Sbjct 130208466 GGCCTTCACGTTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCCGT 130208525 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || ||||| || ||||| ||||||||| || Sbjct 130208526 TAGGGTTTTCACGAAGATCTGCATCTTTGCG 130208556 >seq6 Length=137147148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || |||||||| |||||||| || || |||| || ||||| Sbjct 34075728 TGGAGCGTGGACTCCTTCTGGATATTATAGTCGGCAAGGGTGCGACCGTCTTCGAGCTGC 34075787 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || |||||||||||||| | || | || || ||||| ||| || Sbjct 34075788 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTA 34075847 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | |||||| |||||||| |||| || || | || || || Sbjct 34075848 GCCTTCACATTGTCAATGGTATCGGAGGACTCCACCTCCAAGGTAATCGTCTTCCCTGTT 34075907 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || ||||| ||||| Sbjct 34075908 AGGGTTTTCACGAAGATCTGCAT 34075930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| ||||| || || |||||||| || || ||| |||| |||||||| Sbjct 34075043 ATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGAGTGCGTCCGTCCTCAAGCTG 34075102 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || || ||||| || |||||||||||||| | || | | |||||||||| Sbjct 34075103 CTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCC 34075154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542731172324