Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 147 3e-30 seq3 95.1 2e-14 >seq6 Length=137147148 Score = 147 bits (162), Expect = 3e-30 Identities = 405/613 (66%), Gaps = 12/613 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || ||||| |||||||||| || || ||||| || || || Sbjct 120287568 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTT 120287627 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AA 48256 | ||| ||||||| || || ||||| ||||||||||| | || ||| ||| | | || Sbjct 120287628 AAACCTGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCGGAGAA 120287686 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG-- 48314 ||| || ||||| || || || ||| | | || || ||| | ||| | Sbjct 120287687 GAAGATCCCTTCGACACAGGCGAACGCGACGATGCGTTCCGCG-AAC--GATTCTGAGCC 120287743 Query 48315 -TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| ||| | ||||| || || ||||||||||| ||||| | || || || || Sbjct 120287744 ATCGATCCATCGTAGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAATTGC 120287803 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTA--TCTTTAACGTAAGTATCTATTAAAAGACTA 48431 | |||||| || || || || | ||||| | |||||| || | | || || Sbjct 120287804 GTGGAAGAGACGATTCTTCTC--TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTG 120287861 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || ||||| || || || ||||| ||||| || ||||| || | || || Sbjct 120287862 TACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCG 120287921 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || ||| |||||| | || | | | || | |||||| || || ||||| Sbjct 120287922 GAGACCTGAACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACGATGCCATCGGAT 120287981 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611 || || || || || | || || | ||||| | ||| | || || | | Sbjct 120287982 GCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTCC 120288041 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 |||| || || || | || ||||| || |||||||| || |||||||| ||| Sbjct 120288042 CAGTGGCGGAGGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCT 120288101 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731 || || ||||| | |||||| ||| ||||||||||||||| || ||||| | || Sbjct 120288102 TTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGTCAGGG 120288161 Query 48732 TTTTTTGCAAGGA 48744 ||| ||||||| Sbjct 120288162 TTTGGAGCAAGGA 120288174 >seq3 Length=136109863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||| | | | || | || |||||||| || |||||| ||| |||| || Sbjct 115211872 TCTCTTTCATACTTATTGTACAACCTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 115211813 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || || || ||||| | ||| ||||| || |||| || ||| | || ||||||| Sbjct 115211812 GGTGCCTCGTTGGGGCAAAACAAAGACCATTCTCCATTAGACTGAACCCTTTCCATAAAG 115211753 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| || ||| ||||||||||| | | ||| ||||| Sbjct 115211752 AGATCAGGCACCCAAAGTGCATAAAATAGATCTCTCGCACGATGCTCTTC 115211703 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | ||| || || ||||| || |||||| ||| ||| | | | | Sbjct 115211007 GTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTGG 115210948 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || ||| | ||| ||||||||||| | ||| |||||||| || || || | |||||| Sbjct 115210947 TAAGTTCTGACAGCGGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 115210889 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| ||||| || ||||| || ||| | | ||||| | ||| || | |||| Sbjct 115210888 CATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCAG 115210829 Query 78578 AGTTTTAAAACCAAAATA 78595 ||||| |||||||| || Sbjct 115210828 GGTTTTGAAACCAAAGTA 115210811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664041518720