Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq265020 145 2e-29 seq237122 125 2e-23 seq116342 105 1e-17 seq380573 104 5e-17 seq374839 104 5e-17 seq316697 104 5e-17 seq244339 104 5e-17 seq115563 104 5e-17 seq44042 104 5e-17 seq36536 104 5e-17 seq10584 104 5e-17 seq5481 104 5e-17 seq5438 104 5e-17 seq124495 87.8 4e-12 >seq265020 Length=820 Score = 145 bits (160), Expect = 2e-29 Identities = 311/461 (67%), Gaps = 3/461 (1%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || ||||||||||| |||||| | || || ||||| || | || ||||| || Sbjct 13 TCCTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 72 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 ||||||||||| || ||||| ||| ||| | ||||| || ||| | || ||| Sbjct 73 TTCTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAAC 132 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| | ||| || ||||| || || || | |||| | ||| | || || Sbjct 133 GAGCTGATCTCGCGAGACGAAGGCCTGCACTGCGATTTCGCCTGCCTTCTTTACTCGCTT 192 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || ||| ||||| ||| ||||| ||| | || || || || | | Sbjct 193 CTGAGGAAGAAGCTGAGCGAGGAGCGAGTCAAGGCTATCGTCCGCGACGCGGTGGAGATC 252 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTGAACT 230468 || | |||||| | || ||||| | |||||| || || | || ||||||| | | Sbjct 253 GAGAGGGAGTTTGTGTGCGACGCGCTACCATGT-GCGTTGGTCGGGATGAACGGCGCCTT 311 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | || |||||||| ||||| |||||||| | || | ||| || || |||| ||| Sbjct 312 GATGAGTCAATACATCGAGTTCGTCGCCGACCGGCTGTTGGGTGCGCTAGGGTACGGGAA 371 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||| | ||||||| |||| | |||||||| || ||| | || |||||||| Sbjct 372 GGTGTACGGTGTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGAC 431 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 |||||||||||| ||| | ||| | || || ||| |||||| Sbjct 432 CAACTTCTTCGAGAAGAGGGTCGGGGAGTACCAGAAGGCCT 472 >seq237122 Length=485 Score = 125 bits (138), Expect = 2e-23 Identities = 312/467 (67%), Gaps = 15/467 (3%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || ||||||||||| |||||| | || || ||||| || | || ||||| || Sbjct 13 TCCTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 72 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 ||||||||||| || ||||| ||| ||| | ||||| || ||| | || ||| Sbjct 73 TTCTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAAC 132 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCG---GCGAGCTTATGTATTCA 230346 ||| | ||| || ||||| ||||| || | || | || |||| || || Sbjct 133 GAGCTGATCTCACGAGACGAAGGTCTGCACTGCGACTTTGCTTGCCTGCTT---TACTCC 189 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTT 230403 |||| || ||| | |||| | ||||| ||| || || || || Sbjct 190 ---CTCCTGAGAAAGAAGCTGAGCGAGGAGCGAGTCAAGGCGATCGTTCGCGACGCGGTG 246 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGC 230462 || | ||| | |||||| | || ||||| | || || ||| || | || ||||||| Sbjct 247 GAGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCCGTG-CGCGTTGGTCGGGATGAACGG 305 Query 230463 TGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA 230522 || | ||| | ||||||||||| ||||| ||||| || | || || || || || Sbjct 306 TGCGTTGATGAGCCAGTACATCGAGTTCGTTGCCGATCGGCTGTTGCGAGCGCTAGGGTA 365 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 || ||| || || | ||||||| |||| | |||||||| || ||| | || || Sbjct 366 CGGGAAGGTATATGGTGTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGG 425 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 |||||||||||||||||| ||||| ||| | || || ||| |||||| Sbjct 426 GAAGACCAACTTCTTCGAGAAGCGGGTCGGGGAGTACCAGAAGGCCT 472 >seq116342 Length=5070 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 208 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 149 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 148 CCCCACGGTGGGC 136 >seq380573 Length=793 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 60 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61 CCCACGGTGGGC 72 >seq374839 Length=7001 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 603 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 662 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 663 CCCACGGTGGGC 674 >seq316697 Length=270 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 60 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61 CCCACGGTGGGC 72 >seq244339 Length=678 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13 CCCACGGTGGGC 2 >seq115563 Length=5263 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4763 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4704 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4703 CCCACGGTGGGC 4692 >seq44042 Length=1924 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1513 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1572 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1573 CCCACGGTGGGC 1584 >seq36536 Length=4820 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1631 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1690 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1691 CCCACGGTGGGC 1702 >seq10584 Length=5118 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3968 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3909 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3908 CCCACGGTGGGC 3897 >seq5481 Length=4346 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 658 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 717 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 718 CCCACGGTGGGC 729 >seq5438 Length=2334 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1758 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1817 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1818 CCCACGGTGGGC 1829 >seq124495 Length=1699 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| |||||||||||||| |||||||| || || |||| || ||||| |||||||||||| Sbjct 390 GCCTGTCTAGCTCAGTCGATAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCGAGC 331 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 330 CCCACGGTGGG 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1052456526645750