Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq380537 109 8e-19 seq43027 104 3e-17 seq274579 84.2 3e-11 >seq380537 Length=500 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| ||| | || || || || || || ||||| Sbjct 220 GTTCCCCCCCTCAGCCTCAAAACCAGATGAAGCGTCGACTCCTTTTGGATGTTGTAATCC 279 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| || | ||| || ||||| || ||||||||||||||||| |||||||| ||| Sbjct 280 GCAAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGA 339 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || |||||||||||||| || Sbjct 340 GGGATTCCTTCTTTATCCTG 359 >seq43027 Length=2960 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| ||| | || || || || || || |||||| Sbjct 1109 GTTCCTCCCCTGAGCCTCAAAACCAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCT 1050 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| || | ||| || ||||| || |||||||||||||| || |||||||| ||| Sbjct 1049 GCAAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGCTGATCAGGA 990 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || |||||||| ||||| || Sbjct 989 GGGATTCCTTCCTTATCCTG 970 >seq274579 Length=631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146057 CTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTT 146116 || || || || |||| ||| | || || || || || || ||||| | || || Sbjct 360 CTCAGCCTCAAAACCAGATGAATTGTCGACTCCTTTTGGATGTTGTAATCCGCAATTGTC 419 Query 146117 CTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || | ||| || ||||| || |||||||||||||| | |||||||| ||||| |||||| Sbjct 420 CTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAACGTCTGCTGATCAGGAGGGATTCCT 479 Query 146177 TCTTTATCTTG 146187 |||||||| || Sbjct 480 TCTTTATCCTG 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739845711968000