Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq33053 113 4e-20 seq148231 100 3e-16 seq70941 89.7 5e-13 seq41675 89.7 5e-13 seq154533 86.0 6e-12 seq15585 82.4 8e-11 >seq33053 Length=1800 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||| ||||| || || ||||| || ||| | || | ||| || Sbjct 1549 AACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTC 1490 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || || |||||||||| ||||| |||||||| || ||||| ||||| Sbjct 1489 GAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTG 1430 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | |||||||| || ||| ||||| | ||| | ||||| Sbjct 1429 GATCTTGGCCTTGACATTGTCGATTGTGTCGGAGGACTCGACCTCTAGGGTTATGGTCTT 1370 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| ||||| || ||||| Sbjct 1369 GCCCGTTAGGGTTTTCACGAAGATCTGCAT 1340 >seq148231 Length=1271 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| || || ||||| || ||| | || | ||||||||||||| Sbjct 211 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCGAGCTGT 152 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || ||||||| |||||||| || ||||| || ||||| ||||| ||| || Sbjct 151 TTTCCGGCGAAGATCAGGCGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTG 92 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| ||||| | || | ||||||||||| Sbjct 91 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTT 32 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 31 AGGGTTTTGACGAAGATCTGCAT 9 >seq70941 Length=2107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||| ||||| || || ||||| || ||| | || | ||| || Sbjct 1964 AACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGTCCGTCCTC 2023 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||||||||| || ||| |||||||||||||||| |||||||| || ||||| ||||| Sbjct 2024 GAGCTGTTTTCCGGCAAAGATCAGACGTTGCTGGTCGGGAGGGATTCCTTCCTTGTC 2080 >seq41675 Length=5034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||| ||||| || || ||||| || ||| | || | ||| || Sbjct 4891 AACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGTCCGTCCTC 4950 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||||||||| || ||| |||||||||||||||| |||||||| || ||||| ||||| Sbjct 4951 GAGCTGTTTTCCGGCAAAGATCAGACGTTGCTGGTCGGGAGGGATTCCTTCCTTGTC 5007 >seq154533 Length=826 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || || |||| || ||||| ||||||||||||||||| Sbjct 185 CCACCACGCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCAGCA 126 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| |||||||| ||||||||| |||||| | ||||| || || || Sbjct 125 AGGGTCCTGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 66 Query 139658 ATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || ||||| ||| |||| Sbjct 65 ATGCCCTCCTTGTC-CTGAATTTT 43 >seq15585 Length=2740 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | || | |||||| |||||||| || Sbjct 206 CGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCC 147 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||||| |||||||| || || || || ||||| ||||| ||| || || Sbjct 146 GGCGAAGATCAAGCGTTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGGATCTTGGCCTT 87 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||| ||||| | || | ||||||||||| | || Sbjct 86 GACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGT 27 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 26 TTTGACGAAGATCTGCAT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493608328180000