Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq148231 113 3e-20 seq314259 102 6e-17 seq5063 93.3 3e-14 seq86164 84.2 2e-11 >seq148231 Length=1271 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||||| | |||||||||||| || | |||||||||| | Sbjct 919 CCTCCACGTAGACGGAGGACCAAATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCC 860 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| ||||| || |||||||| || |||| | ||| || || | || Sbjct 859 AAGGTACGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 800 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || || | | ||||| | |||||| Sbjct 799 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCTATGGTGTCCGAACTCTCGACT 740 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || ||||| || ||||||||||| || ||||| Sbjct 739 TCTAGGGTAATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 693 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||| | ||||| |||||||||||| || | ||||| || | Sbjct 1147 CCTCCACGAAGGCGGAGCACAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 1088 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || || |||||||| |||| ||||| || || | || Sbjct 1087 AGCGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 1028 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | || || || ||| ||| || | ||| |||||| Sbjct 1027 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATTGTATC-CGAGCTCTCGAC 969 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || |||||||||||||| ||||| Sbjct 968 CTCCAAAGTAATTGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 921 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||| ||| | |||||||||||| || | |||||||||| Sbjct 691 CCTCCACGAAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCG 632 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||| || || || |||| | ||| || || | || Sbjct 631 AGGGTTCGGCCGTCTTCAAGTTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGA 572 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | || || || | | |||||| | ||| || Sbjct 571 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGGAACTCTCCACC 512 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || ||||| || || ||||||||||| || ||||| Sbjct 511 TCGAGCGTGATCGTCTTTCCCGTGAGGGTTTTCACAAAGATCTGCAT 465 >seq314259 Length=830 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||| | ||||| |||||||||||| || | ||||| || | Sbjct 380 CCTCCACGAAGGCGGAGCACAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 321 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || || |||||||| |||| ||||| || || | || Sbjct 320 AGCGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 261 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | || || || ||| ||| || | ||| |||||| Sbjct 260 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATTGTATC-CGAGCTCTCGAC 202 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || |||||||||||||| ||||| Sbjct 201 CTCCAAAGTAATTGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||||| | |||||||||||| || | |||||||||| | Sbjct 152 CCTCCACGTAGACGGAGGACCAAATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCC 93 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 || ||||| |||| ||||| || |||||||| || |||| | ||| || || Sbjct 92 AAGGTACGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTC 40 >seq5063 Length=5799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||| | ||| | |||||||||||| || | |||||||| | Sbjct 432 CCTCCACGAAGGCGGAGCACAAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGCG 373 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || || || || || || || |||| ||||| || || | || Sbjct 372 AGGGTGCGACCGTCCTCTAACTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGA 313 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | |||||| ||| |||||| Sbjct 312 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCGAC 254 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || |||||||||||||| ||||| || ||||| Sbjct 253 CTCCAAAGTGATGGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 206 >seq86164 Length=2128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || ||||||||| | |||||||| | Sbjct 106 CCACCACGGAGGCGAAGCACCAAATGGAGCGTAGACTCCTTTTGAATGTTGTAATCAGCA 165 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || |||||||| || |||| | ||| || || | || Sbjct 166 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 225 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| ||||||| || | | ||||| ||| || || Sbjct 226 ATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTGTCGATGGTGTC-AGAGCTTTCCAC 284 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| |||||||||||||| || ||||| Sbjct 285 CTCGAGGGTGATGGTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379528898769450