Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq274579 95.1 1e-14 seq107409 89.7 5e-13 >seq274579 Length=631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | ||||||||| || || ||||| ||||||||||| ||||| ||| || Sbjct 368 CAAAACCAGATGAATTGTCGACTCCTTTTGGATGTTGTAATCCGCAATTGTCCTCCCATC 427 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGT-TGCTGATCGGGAGGTATGCCTTCTTTGT 143090 ||| | ||| || |||||| | |||| |||| |||||||| ||||| || |||||||| | Sbjct 428 TTCCAATTGCTTCCCAGCAAAAATCA-ACGTCTGCTGATCAGGAGGGATTCCTTCTTTAT 486 Query 143091 C 143091 | Sbjct 487 C 487 >seq107409 Length=3443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| || ||||| ||||| ||||||||||| Sbjct 2422 CCACCACGGAGACGGAGGACCAAATGAAGGGTCGATTCCTTTTGGATGTTGTAATCAGCG 2481 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || || || |||||| |||||| | ||||||||| || || Sbjct 2482 AGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGGGGA 2541 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| || | | || | || |||| | ||| || Sbjct 2542 ATCCCCTCCTTGTCCTGAATTTTAGCCTTGACGTTGTCGATGGTATCCGAGCTTTCGACC 2601 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 2602 TCAAGAGTGATGGTCTTTCCAGTAAGGGTTTTCACGAAGATTTGCAT 2648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504504520278000