Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq230935 107 1e-18 seq302927 102 6e-17 seq15585 98.7 7e-16 seq208788 95.1 9e-15 seq5063 93.3 3e-14 seq148231 86.0 5e-12 seq107409 86.0 5e-12 >seq230935 Length=680 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||||||||| ||||| || ||||||||||| || |||| |||| || Sbjct 190 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGCAAGGGTTCTGCCGTCCTCA 249 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | |||| | || ||||| ||||| || || ||||| | Sbjct 250 AGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGA 309 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || |||| || || ||||||||||| || Sbjct 310 ATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTCTTT 369 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || |||||||| ||||| Sbjct 370 CCGGTCAAGGTCTTAACAAAAATCTGCAT 398 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || ||||| || |||||||||||| || |||| |||| || Sbjct 418 ACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTCG 477 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | |||| | || ||||| ||||| ||||| ||||| | Sbjct 478 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 537 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || ||||| ||| | |||| || || || || ||||| || Sbjct 538 ATCTTGGCTTTGACATTATCAATGGTGTCGGAACTTTCAACCTCCAAAGTGATGGTCTTC 597 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 598 CCAGTGAGGGTCTTAACAAAGATTTGCAT 626 >seq302927 Length=390 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || ||||| || |||||||||||| || | || |||| || Sbjct 204 AACCAAATGAAGGGTCGATTCTTTCTGAATGTTGTAATCGGCAAGGGTCCTGCCGTCCTC 145 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||||||| | |||| | || ||||| || || || || ||||| Sbjct 144 CAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 85 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||||||| | || ||||| || |||| || || || |||||||| || Sbjct 84 AATCTTGGCCTTTACATTGTCAATGGTGTCAGAGCTTTCAACCTCCAACGTAATGGTCTT 25 Query 15334 ACCTGTCAGAGTTTTTACAAAAAT 15357 || || || || || |||||||| Sbjct 24 TCCAGTGAGGGTCTTCACAAAAAT 1 >seq15585 Length=2740 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || ||||| || || || |||||||| ||| ||| ||| ||||||| Sbjct 218 AACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTC 159 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || ||| | ||||| ||||| ||||| ||||||||||| ||||| Sbjct 158 AAGCTGTTTTCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTG 99 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || | || ||||| ||| | || || || | || ||||| || Sbjct 98 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTT 39 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || || || ||||| ||| Sbjct 38 GCCGGTTAGGGTTTTGACGAAGATCTGCATGTTT 5 >seq208788 Length=2051 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||||||||| || || ||||| ||||||||||| ||| | | |||| || Sbjct 539 ACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCAGCGAGAGTGCGACCGTCCTCA 480 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | ||||| | ||| || || |||||||| || ||||| Sbjct 479 AGCTGCTTTCCGGCGAAGATCAACCTTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 420 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || |||||||| | || || || | || ||||| || Sbjct 419 ATTTTAGCCTTGACATTGTCGATGGTATCCGAGCTCTCGACCTCGAGAGTGATGGTCTTT 360 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || || || ||||| || || |||||||| | | ||| Sbjct 359 CCAGTAAGGGTTTTCACGAAGATTTGCATCTATCAAA 323 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | | || | |||||||| || || || || ||||||||||| Sbjct 1471 TGCCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTG 1412 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || |||| || | ||| || || ||| | |||| | || ||||| || Sbjct 1411 CAAGGGTCCTTCCGTCCTCAAGTTGCTTCCCGGCGAAAATCAGCCTCTGCTGGTCTGGTG 1352 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || ||||| ||| || |||| ||| | || || || || | | || | Sbjct 1351 GAATCCCCTCCTTGTCTTGAATCTTTGTCTTCACATTATCAATTGTGTCTGAACTCTCCA 1292 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || ||||| || || || |||||||| ||||| Sbjct 1291 CCTCGAGGGTGATGGTCTTTCCTGTAAGGGTCTTGACAAAAATCTGCAT 1243 >seq5063 Length=5799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||| || || || ||||||||||| || | | |||| ||||| || Sbjct 409 ATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGACCGTCCTCTAACTG 350 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 349 CTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTT 290 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||| | || || || || || ||||| || || || Sbjct 289 GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGTCTTGCCGGT 230 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAAT 15378 |||||||| ||||| || ||||| || ||| ||||| Sbjct 229 TAGAGTTTTGACAAAGATCTGCATGATTTCAAAGAAAAT 191 >seq148231 Length=1271 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||| || || || |||||||||||| | | | |||| || Sbjct 901 ACCAAATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACCGTCCTCC 842 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||| ||| | |||| | || ||||| ||||| || || ||||| Sbjct 841 AACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGG 782 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | |||||||| || | | || || |||| ||||||||| || Sbjct 781 ATCTTGGCCTTCACGTTGTCTATGGTGTCCGAACTCTCGACTTCTAGGGTAATGGTCTTG 722 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||| || |||||| Sbjct 721 CCGGTAAGGGTTTTCACAAAGATCTGCATA 692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||| || || || |||||||||||| || ||| ||||||| | ||| Sbjct 668 ATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCGTCTTCAAGTTG 609 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | |||| | || ||||| |||||| ||||| ||||| || || Sbjct 608 TTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGGATCTT 549 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || ||||| ||| | | || || || | || || || || || || Sbjct 548 AGCCTTCACGTTGTCGATGGTGTCGGAACTCTCCACCTCGAGCGTGATCGTCTTTCCCGT 489 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 488 GAGGGTTTTCACAAAGATCTGCAT 465 >seq107409 Length=3443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| ||||||||||| ||| | | | || || Sbjct 2440 ACCAAATGAAGGGTCGATTCCTTTTGGATGTTGTAATCAGCGAGAGTGCGGCCATCCTCA 2499 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | ||||| | ||| || || ||||| || || ||||| | Sbjct 2500 AGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGA 2559 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || |||||||| |||| || || | || ||||| || Sbjct 2560 ATTTTAGCCTTGACGTTGTCGATGGTATCCGAGCTTTCGACCTCAAGAGTGATGGTCTTT 2619 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || || || ||||| || || |||||||| | | |||||| Sbjct 2620 CCAGTAAGGGTTTTCACGAAGATTTGCATCTAT--AAATAA 2658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | | || | |||||||| || || || || ||||||||||| Sbjct 1508 TGCCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCG 1567 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || | ||| || |||||| | ||||| | || ||||| | Sbjct 1568 CAAGAGTCCTTCCATCCTCAAGTTGCTTCCCAGCGAAAATCAATCTCTGCTGGTCCGGCG 1627 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || || || ||||| ||| ||||| ||| ||| | || || ||||| | | || Sbjct 1628 GGATCCCCTCCTTGTCCTGAATCTTTGC-CTTCACATTATCGATAGTATCCGAACTCTCC 1686 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || ||||| || ||||| || || || ||||| || ||||| Sbjct 1687 ACCTCAAGAGTGATGGTCTTTCCTGTAAGGGTCTTGACAAATATCTGCAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360431122284525