Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq154533 96.9 3e-15 seq86164 93.3 3e-14 seq65596 87.8 1e-12 >seq154533 Length=826 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||||||||| || |||||||||||||||| || | | ||||| ||||| Sbjct 390 GTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGCCAGAGTCCTCCCATCCTCGAGCTG 331 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||| ||| |||||||||||||||| || || | |||||| ||||| Sbjct 330 CTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTC 280 >seq86164 Length=2128 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | |||||||||||||||||| |||||||| || | ||| | ||||||| Sbjct 123 CACCAAATGGAGCGTAGACTCCTTTTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTC 182 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || |||||||| || ||| | ||||| ||||| Sbjct 183 GAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 242 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 || || ||| || | | ||| || | ||| || ||| |||| ||| ||||| Sbjct 243 GATCTTAGCTTTGACATTGTCGATGGT---GTCAGAGCTTTCCACCTCGAGGGTGATGGT 299 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | |||||| ||||| || ||||| Sbjct 300 CTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 332 >seq65596 Length=1444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||||||||| || ||||| |||||||||| || | | ||||| ||||| Sbjct 390 GTGCAGGGTAGACTCCTTCTGGATATTATAATCCGCCAGAGTCCTCCCATCCTCAAGCTG 331 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||| ||| | ||||| |||||||| || || | |||||||||||| Sbjct 330 CTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTC 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412571841708850