Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3 583 3e-162 seq332406 156 1e-33 seq137405 140 9e-29 seq295831 131 5e-26 seq333312 122 3e-23 seq1619 105 2e-18 seq181776 95.1 3e-15 seq303336 93.3 1e-14 >seq3 Length=31233 Score = 583 bits (646), Expect = 3e-162 Identities = 724/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1662 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1603 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| |||| || || || || || Sbjct 1602 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 1543 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1542 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1483 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||||||||| || ||| Sbjct 1482 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTACCCAATC 1423 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| ||||||||||| || ||||| ||| | | |||| Sbjct 1422 TGGGAAGCGGCTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGTT 1363 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| || ||| | |||||||||| || | | Sbjct 1362 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1303 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| ||| |||| Sbjct 1302 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1243 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || ||| |||| ||||| || ||| ||| ||||||||||| || || Sbjct 1242 GT-TTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 1184 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| || Sbjct 1183 CTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 1124 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 1123 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1064 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 1063 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGG 1004 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 1003 TTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGG 944 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || |||||||| |||||| ||||||||||||||||| ||||| || || Sbjct 943 CCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGC 884 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| ||||| | | || || |||||||||||||||| Sbjct 883 TGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAA 824 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 | | ||||||||||| || || || || ||||||||| ||||| || |||| | Sbjct 823 CTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAATA 765 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | ||||| || || | ||||||||||||||||| |||| Sbjct 764 CTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCACGAGCGTAATG 705 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||| || || ||||| Sbjct 704 CTCATAACTTCCCTCTAGACCTAGCT 679 >seq332406 Length=435 Score = 156 bits (172), Expect = 1e-33 Identities = 196/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || || ||||| ||||||| || |||||||| |||||| ||||||| ||||||||| Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAC 60 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 ||||| || ||| ||| || | || || || | | ||||| | | || || || || Sbjct 61 TTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTACCGCTTTAGGTATTAGCGCT 120 Query 20118 ATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA---CGG 20173 |||||||||||| | |||||||||| || || || | ||||||||| ||||| || Sbjct 121 ATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCTCGT 180 Query 20174 AAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTAT 20233 | |||| || ||||||||| | | || | ||||| || || | ||||||| Sbjct 181 GTAATTAAT----ACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTAT 236 Query 20234 GCACGAGCGCAATGCTCATAACTTCCC 20260 ||||||||| ||||||||| ||||||| Sbjct 237 GCACGAGCGTAATGCTCATGACTTCCC 263 >seq137405 Length=2057 Score = 140 bits (154), Expect = 9e-29 Identities = 363/544 (67%), Gaps = 16/544 (3%) Strand=Plus/Plus Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 |||| ||| | |||||| | || |||| ||||||| ||||||||| | |||| | Sbjct 608 TTTTTTTGACCGCATGCCTTTAGGAATCTGCTGTACTTTGAACTTTATGATTATATTATA 667 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGG 19861 ||| ||||| ||||||||||| | || | |||| | ||||| ||| | |||||| Sbjct 668 AGCTATGCACAACATCCTTATGCACCTATTTCGCATGTTAGGTGTAGCTAGTGTATTCAA 727 Query 19862 TGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC-ATCAAGGAAA 19920 || || || ||| |||||| || || | | | || | || | | ||||||| || Sbjct 728 CGGCTCCCTATTCAGTGCTATACATGGTT-TCTCGATAATCTCTAGTTTGATCAAGGCAA 786 Query 19921 CAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGA-CATAT 19979 | || | || ||| || | || ||| |||| ||| | ||| | | | ||| Sbjct 787 CCACAAAAAATAAATCCGTTAATAAAGGTCATATATTCGATCAAAAGGAAAAAAACCTAT 846 Query 19980 AATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAAT 20039 ||| |||| || || | || || ||||| ||||||| || ||| || |||||| Sbjct 847 AATGTTGTAGCCGCTTATGGTTATTTTGGCCGATTGATCTTCCAACATAAAAATTTCAAC 906 Query 20040 AATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACC 20099 ||||||||||||||||| ||||||| | | ||| | || | || | || ||||| Sbjct 907 AATTCTCGTTCTTTACACTTCTTTCCAGTTGCTTGGCTTGTAATAGGTACTGGGTTTACC 966 Query 20100 TCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTA 20159 || | | || |||||| |||||| ||| | || | |||||| || || | | ||| Sbjct 967 GCCTTAGATATTAGCACTACGGCTTTTAACTTAAAGGATTTTAATTTCAATTACTTTGTA 1026 Query 20160 GTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAAATAGAGCTAACC 20217 | |||| ||||| || |||| || ||||||||| | ||||| | || || | Sbjct 1027 GCTGATGGTCAA-GGTTGTGTAATTAATACTTGGGCTGATATCATTAACCA-TGCCAATC 1084 Query 20218 TCGGATTTGAAGTTATGCACGAGC-------GCAATG--CTCATAACTTCCCACTTGATT 20268 | | | |||||||||| |||| | |||| |||||||||||| | || | Sbjct 1085 TTCGTATGAAAGTTATGCATGAGCGACGGGAGTAATGGTATCATAACTTCCCCTTAGACT 1144 Query 20269 TAGC 20272 |||| Sbjct 1145 TAGC 1148 >seq295831 Length=1525 Score = 131 bits (144), Expect = 5e-26 Identities = 195/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || || || |||| ||||| | || ||||||| || | ||||| ||| |||| Sbjct 1241 ACCAGCACTGAAAACCATCTTTACATTGGATGGTTTGTTGTTTTGATGATCCCTACCTTA 1300 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | | || ||| | ||||| |||| || || || || || || ||||||| ||| Sbjct 1301 TTGACCGCAACTTTTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGATAGATATTGAT 1360 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || | ||||| || |||| || || || | || |||||||||||||||||||| || Sbjct 1361 GGTGTTCGTGAACCTGTTTTTGGATCCCTACTTTATGGAAACAATATTATTTCTGGTGCC 1420 Query 19485 GTAGTTCCAA--GCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA 19542 | |||| | | |||| ||||| |||||||||| || ||||||||||| | Sbjct 1421 ATTATTCCTACTTTTGCAAT--TATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCTT 1478 Query 19543 CTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577 || | ||||| ||||||||||| || ||||| ||| Sbjct 1479 CTGTTGATGAATGGTTATACAATGGAGGTCCTTAT 1513 >seq333312 Length=291 Score = 122 bits (134), Expect = 3e-23 Identities = 202/285 (71%), Gaps = 9/285 (3%) Strand=Plus/Minus Query 19548 GATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGA 19607 ||||| ||||||||||| || ||||| ||| | | ||| | ||||||||| | || Sbjct 283 GATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGCTCTACACTTCTTACTTGGT 224 Query 19608 GTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGA-ATGAG----AC 19662 ||||| || ||| |||||||||| || | | | || ||||| | Sbjct 223 GTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCTGTCTGGGTCATGAGTGGGAA 164 Query 19663 CATGGATATTCGTA-GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT 19721 | | | | ||||| | ||| |||| || | ||| ||| |||||| ||||| | | Sbjct 163 CTTAGTT-TTCGTCTGGGTATTCAGCTCCTGTTGCAGTTGCTACTGCTGT-TTTCTTGAT 106 Query 19722 -TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTT 19780 || ||| || | ||||| || ||| ||| ||||||||||| || |||||||||||||| Sbjct 105 CTATCCAATTAGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTT 46 Query 19781 TAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCA 19825 ||||| ||| | ||||||||||| || ||||| ||||||||||| Sbjct 45 CAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1 >seq1619 Length=8420 Score = 105 bits (116), Expect = 2e-18 Identities = 221/325 (68%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || || || || ||||| | || |||||||| || | Sbjct 2762 TTTTGTAACTGGATAACCAGCGTTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTGTG 2821 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | || | ||| | ||||| |||| ||||| || || || Sbjct 2822 ATGATCCCTACCTTATGA-CTCCAACTTTTGTATTTATTATCGCTTTTATTGCTGC-CCT 2879 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 | |||||||| ||||| || ||||| | |||| || || || | || |||||||| Sbjct 2880 CTAGTAGATATTGATGGTATTCGTGAACTTGTTTTTGGATCTCTACTTTATAGAAACAAT 2939 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAA--GCTCCAATGCAATAGGACTGCACTTTTATCCGA 19527 ||||||| ||| | |||| | || ||| | ||||| |||||||||| | | Sbjct 2940 ATTATTTTTGGTTTTATTATTCCTACTTCTGCAA--CTATAGGTTTGCACTTTTACTCAA 2997 Query 19528 TCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTG 19587 |||| ||| | || | ||||| ||| ||||||| || ||||| || | | ||| Sbjct 2998 TCTGAAAAGTGGCTTCTGTTGATGAATGGCTATACAATGGTGGTCCTAATGAGTTAATTG 3057 Query 19588 TCTTCCACTTCTTAATAGGAGTAGC 19612 | | ||||||||| | || ||||| Sbjct 3058 TTCTACACTTCTTACTTGGTGTAGC 3082 >seq181776 Length=4072 Score = 95.1 bits (104), Expect = 3e-15 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 19816 TCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCT 19875 |||||||||| || || |||||| | ||||| ||||| |||||||| | || || ||| Sbjct 4072 TCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCAGCTCCCTATTCA 4013 Query 19876 CTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTAT 19935 ||||||||| || ||||| ||||| | |||| |||||| || || ||| || Sbjct 4012 GTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAAT 3953 Query 19936 CGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGT 19987 | || | | || | ||||| ||||| ||||| || ||||||||||| Sbjct 3952 CTGTTAATGAAAGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 3901 >seq303336 Length=741 Score = 93.3 bits (102), Expect = 1e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | | | | | || || || ||| | ||||| | || |||||||| || | Sbjct 531 TTTTGTAACTAGATAATCAGCACTGAAAACTGTCTTTACATTGGATGGTTTGGTGTTTTG 590 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||||||| | || ||| || ||||| || | || || || | || Sbjct 591 ATGATCCCTACCTTACTAACCGCAACTTCTGTATTTATTATCACTTTCATTGCTACCCCT 650 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 | ||| |||| ||||| || ||||| || |||| || || || | || ||||||||| Sbjct 651 CTGGTACATATTGATGGTATTCGTGAACCTATTTCTGGATCTCTACTTTATGGAAACAAT 710 Query 19470 ATTATTTCTGGAGC 19483 ||||||||||| || Sbjct 711 ATTATTTCTGGTGC 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143762320494900