Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3 527 1e-144 seq332406 125 1e-23 seq295831 114 2e-20 seq333312 111 3e-19 seq371407 98.7 2e-15 seq8393 89.7 8e-13 seq1619 89.7 8e-13 >seq3 Length=31233 Score = 527 bits (584), Expect = 1e-144 Identities = 685/944 (73%), Gaps = 2/944 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1622 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 1564 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1563 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1504 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| ||||| || || |||||||| || |||| |||| || || Sbjct 1503 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATA 1444 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || ||||||||||| || || ||||||| ||| | ||||||||| Sbjct 1443 GGTTTGCACTTTTACCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAATGGT 1384 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| |||| | | | |||||| | | || | | || ||||| | Sbjct 1383 GGTCCTTATGAGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 1324 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 1323 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 1264 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | || ||| | ||||| || || || Sbjct 1263 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCT 1204 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 |||||||||||| |||| || || || || |||||||||||| | ||||||||||| || Sbjct 1203 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 1144 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 1143 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 1084 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 1083 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 1024 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || ||||| || || Sbjct 1023 AATGAATCCGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 964 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 || || ||||| || || || || | |||||||| |||||| |||||||| | Sbjct 963 GCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGT 904 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 ||||||||||||||| || | |||||||| | || | ||||| ||| || | ||| Sbjct 903 TCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGT 844 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||| ||||||| || || ||||| ||||| || |||||| Sbjct 843 ATTAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGT 784 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 |||| || || |||||||| |||| | ||||| | || || |||||||||||| Sbjct 783 CAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAA 724 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||| | ||||| || |||||||| || ||| |||| Sbjct 723 GTTATGCACGAGCGTAATGCTCATAACTTCCCTCTAGACCTAGC 680 >seq332406 Length=435 Score = 125 bits (138), Expect = 1e-23 Identities = 192/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 212278 GGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACAC 212337 || || || || || | |||||||| |||||| |||||||| ||||||| Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAC 60 Query 212338 TTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACA 212397 |||||||| || | |||||| | | || | | ||| ||| || | ||||| || | Sbjct 61 TTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTACCGCTTTAGGTATTAGCGCT 120 Query 212398 ATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG 212457 ||||| |||||| || |||| || || ||||| |||| || |||||| || | Sbjct 121 ATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCTCGT 180 Query 212458 GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCAC 212517 || || |||||||| |||| | ||||| | || || ||||||||| ||||||||||| Sbjct 181 GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTATGCAC 240 Query 212518 GAAAGAAATGCACACAACTTCCCACTTGACTTAG 212551 || | ||||| || ||||||| | ||| ||| Sbjct 241 GAGCGTAATGCTCATGACTTCCCTGTAGACCTAG 274 >seq295831 Length=1525 Score = 114 bits (126), Expect = 2e-20 Identities = 182/257 (71%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| ||||||| |||| | |||||||| | ||| | | | ||||| ||||| Sbjct 1266 TTGGATGGTTTGTTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTTTGTATTTATT 1324 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| | ||||| || || | |||||||| || ||| Sbjct 1325 ATCGCTTTCATTGCTGCCCCTCCGATAGATATTGATGGTGTTCGTGAACCTGTTTTTGGA 1384 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| ||||| || || |||||||| || |||| ||| ||||| Sbjct 1385 TCCCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTTT---GCAATT 1441 Query 211789 ---GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 ||||| ||||| || || ||||||||||| || || ||||||| ||| | |||||| Sbjct 1442 ATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAAT 1501 Query 211846 GGTGGTCCTTACCAGTT 211862 || |||||||| |||| Sbjct 1502 GGAGGTCCTTATGAGTT 1518 >seq333312 Length=291 Score = 111 bits (122), Expect = 3e-19 Identities = 202/291 (69%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 211823 CTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAAT--CT-TCCACTTCC 211879 || ||||||| ||| | ||||||||||||||||| |||| ||| || | |||||| Sbjct 288 CTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGTT---AATTGCTCTACACTTCT 232 Query 211880 TTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGT-ATG 211938 | | || | | || ||||| ||||||||||| | | || | ||| ||| Sbjct 231 TACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCTGTCTGGGTCATG 172 Query 211939 CGTC----CTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATT 211994 || ||| | | | || |||||||| ||||| ||| ||| ||||| || Sbjct 171 AGTGGGAACTTAGTTTTCGTCTGGGTATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTT 112 Query 211995 CCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGG 212054 | | | || ||| | |||| || || || |||||||||||| |||| || || || Sbjct 111 CTTGATCTATCCAATTAGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGG 52 Query 212055 AACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCA 212105 || |||||||||||| | ||||||||||| || || |||||||||||||| Sbjct 51 TACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1 >seq371407 Length=281 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 211786 ATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 || ||||| || || || || ||||||||||| | || ||||||| ||| | |||||| Sbjct 194 ATAGGTTTGCATTTTTACCCAATCTGGGAAGCGGTT-CTGTTGATGAATGGTTATACAAT 136 Query 211846 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGA 211905 ||||||||||| ||| | | | |||||| | | || | | || ||||| Sbjct 135 GGTGGTCCTTATGTGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 76 Query 211906 AGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCA 211965 | ||||||||||| | ||| |||||||||| |||||||| |||||| |||||| Sbjct 75 CGTGAGTGGGAACTTAGTTTTCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCA 16 Query 211966 GCACCTGTATCAGC 211979 || ||||| |||| Sbjct 15 GCTCCTGTTGCAGC 2 >seq8393 Length=1872 Score = 89.7 bits (98), Expect = 8e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 211739 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACT 211798 ||| | |||| || || | |||||| || |||| |||| | || || ||||| |||| Sbjct 1192 ATGTTTACAATATTATTTATGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTGCACT 1133 Query 211799 TCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACC 211858 | || || |||| |||||| || || ||||||| ||| | ||||||||||||||||| Sbjct 1132 TTTACCCAATCTAGGAAGCGGCTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATG 1073 Query 211859 AGTT 211862 |||| Sbjct 1072 AGTT 1069 >seq1619 Length=8420 Score = 89.7 bits (98), Expect = 8e-13 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | ||| | || |||| ||||| Sbjct 2802 TTGGATGGTTTGGTGTTGTGATGATCCC-TACCTTATGACTCCAACTTTTGTATTTATTA 2860 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || || || || || |||| || ||||| || || || ||||||| || ||| | Sbjct 2861 TCGCTTTTATTGCTGC-CCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTTTGGAT 2919 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||| | ||||| || || | |||| || |||| |||| | || | Sbjct 2920 CTCTACTTTATAGAAACAATATTATTTTTGGTTTTATTATTCCTACTTCTGCAACTATAG 2979 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| || | ||||| ||| || || ||||||| ||||| |||||||||| Sbjct 2980 GTTTGCACTTTTACTCAATCTGAAAAGTGGCTTCTGTTGATGAATGGCTATACAATGGTG 3039 Query 211850 GTCCTTACCAGTT 211862 ||||| | |||| Sbjct 3040 GTCCTAATGAGTT 3052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803557549399000