Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq230935 104 2e-17 seq5063 98.7 9e-16 seq208788 95.1 1e-14 seq154533 86.0 5e-12 >seq230935 Length=680 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || |||| || | || || || ||| Sbjct 398 ATGCAGATTTTTGTTAAGACCTTGACCGGAAAGACCATTACCTTGGAGGTTGAAAGCTCT 339 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| || || ||||| || || Sbjct 338 GACACCATTGATAATGTCA---AGGCCAAGATTCAA-GACAAGGAGGGCATTCCCCCAGA 283 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | |||||||||||||| || | || || | | || | | ||||| Sbjct 282 CCAGCAGAGGCTGATTTTTGCCGGCAAGCAGCTTGAGGACGGCAGAACCCTTGCTGATTA 223 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||||||||| || ||||| ||||| Sbjct 222 CAACATCCAGAAAGAATCCACCCTTCATTTGGTGCT 187 >seq5063 Length=5799 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| || ||||||| | || || ||| || Sbjct 206 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAGACCATCACTTTGGAGGTCGAGAGCTCC 265 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 266 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAG 325 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || ||||| || | |||||| | | |||||||| Sbjct 326 CAGCGTCTGATCTTCGCTGGAAAGCAGTTAGAGGACGGTCGCACCCTCGCTGATTACAAC 385 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||| || ||| | ||||| | || | ||||||| Sbjct 386 ATCCAGAAGGAGAGCACTCTTCATCTTGTGCTCCGCCTTCGTGGAGGAA 434 >seq208788 Length=2051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || ||||||| |||| |||||| || Sbjct 1242 AATGCAGATTTTTGTCAAGACCCTTACAGGAAAGACCATCACCCTCGAGGTGGAGAGTTC 1301 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| |||| | ||| ||||| || ||||||||||| |||| Sbjct 1302 AGACACAATTGATAATGTGAAGACAAAGATTCAA-GACAAGGAGGGGATTCCACCAGACC 1360 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | ||||| ||||| || ||| | || || | | || | | ||||||| Sbjct 1361 AGCAGAGGCTGATTTTCGCCGGGAAGCAACTTGAGGACGGAAGGACCCTTGCAGATTACA 1420 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || || || | ||||| Sbjct 1421 ACATCCAGAAGGAGTCTACCCTTCACCTTGTGCT 1454 >seq154533 Length=826 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| | || || ||| || Sbjct 187 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACGATCACCTTGGAGGTCGAGAGCTCA 246 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||| | ||| ||||| || || ||||| || ||||| Sbjct 247 GACACCATTGACAATGTGAAGTCAAAGATTCAG-GACAAGGAGGGCATTCCTCCAGACCA 305 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | |||||||||| || || || | || |||| | ||| ||| |||||||| Sbjct 306 GCAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGGAGGACTCTGGCGGATTACAA 365 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 366 TATCCAGAAGGAGTCTACCCTGCA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431236518710375