Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq154533 91.5 1e-13 seq65596 87.8 1e-12 seq107409 84.2 2e-11 seq208788 82.4 5e-11 >seq154533 Length=826 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| || || ||| |||| || | || Sbjct 187 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACGATCACCTTGGAGGTCGAGAGCTCA 246 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| || || ||||| | ||| | |||| Sbjct 247 GACACCATTGACAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 306 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| |||||||| || || || || ||| | ||| |||| ||||||||| Sbjct 307 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGGAGGACTCTGGCGGATTACAAT 366 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| ||||| || || Sbjct 367 ATCCAGAAGGAGTCTACCCTGCA 389 >seq65596 Length=1444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || || || || || ||| |||| || | || Sbjct 187 ATGCAGATTTTTGTCAAGACCCTGACCGGGAAGACAATCACCTTGGAGGTTGAGAGCTCA 246 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| || |||||||| | ||| | |||| Sbjct 247 GACACCATTGACAATGTGAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAG 306 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || || ||| | ||| |||| ||||| ||| Sbjct 307 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACTCTGGCGGATTATAAT 366 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| ||||| || || Sbjct 367 ATCCAGAAGGAGTCTACCCTGCA 389 >seq107409 Length=3443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || ||||| || |||| ||| | | Sbjct 1508 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCG 1449 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| || || ||||| | || |||| Sbjct 1448 GACACTATTGATAATGTCAAGGCAAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 1389 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || || || || ||| || ||| |||| |||||||| Sbjct 1388 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACTTTGGCTGATTACAAC 1329 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| || || |||||| | || | ||| | || || || | |||| Sbjct 1328 ATTCAGAAGGAGTCCACCCTTCATCTTGTCCTTCGTCTCCGTGGTGGCTTTTAA 1275 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||||||||| | || | |||| ||||| ||||||||||| || || || || || Sbjct 1871 GATAAAGAGGGCATCCCACCAGACCAGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAG 1812 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| || ||| | || || ||||| ||||||||||| ||||| ||||| Sbjct 1811 GATGGAAGGACTCTTGCAGACTACAACATTCAGAAGGAGTCTACCCTTCA 1762 >seq208788 Length=2051 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || ||||| || |||| |||| | | Sbjct 1471 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACTTTGGAGGTGGAAAGCTCG 1530 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| || || ||||| | || |||| Sbjct 1531 GACACTATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 1590 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || || || || ||| || ||| |||| |||||||| Sbjct 1591 CAGAGGCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGAAGGACTTTGGCTGATTACAAC 1650 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTA 22066 ||||||||||| || || |||||| | || | ||| | || || || | ||| Sbjct 1651 ATTCAGAAGGAGTCCACCCTTCATCTTGTCCTCCGTCTCCGTGGTGGCTTTTA 1703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356396291067850