Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq148231 107 2e-18 seq314259 104 2e-17 seq4315 98.7 8e-16 seq208788 96.9 3e-15 seq107409 95.1 1e-14 seq5063 89.7 4e-13 seq380537 86.0 5e-12 seq43027 86.0 5e-12 >seq148231 Length=1271 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || |||| |||||| |||||||||||||| ||||||||||| ||| Sbjct 919 CCTCCACGTAGACGGAGGACCAAATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCC 860 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| ||||| ||||||||||| || ||||| | |||||| ||| || Sbjct 859 AAGGTACGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 800 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | ||| |||||| || || ||| | | | | || | | ||| | Sbjct 799 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCTATGGTGTCCGAACTCTCGACT 740 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| || |||||||||||||| ||||| Sbjct 739 TCTAGGGTAATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || |||||||||||||| |||||||||||||| ||||||||||| || Sbjct 692 ACCTCCACGAAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGC 633 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| || | ||| || || || || ||||| | |||||| ||| Sbjct 632 GAGGGTTCGGCCGTCTTCAAGTTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCC 578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||| ||||| || |||||||||||||| |||||||| || || Sbjct 1147 CCTCCACGAAGGCGGAGCACAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 1088 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| |||| ||||| |||||||| ||||| |||||||| ||| Sbjct 1087 AGCGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCC 1034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| |||||||||||||| || ||||||||| ||||| ||||| || Sbjct 463 CCTCCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATGTTATAATCCGCT 404 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| |||| ||||| ||||| || ||||| | |||||||||| Sbjct 403 AGGGTTCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCC 350 >seq314259 Length=830 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || |||| |||||| |||||||||||||| ||||||||||| ||| Sbjct 152 CCTCCACGTAGACGGAGGACCAAATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCGGCC 93 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| ||||| ||||||||||| || ||||| | |||||| ||| || Sbjct 92 AAGGTACGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 33 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 32 ATCCCCTCCTTGTCC 18 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||| ||||| || |||||||||||||| |||||||| || || Sbjct 380 CCTCCACGAAGGCGGAGCACAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 321 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| |||| ||||| |||||||| ||||| |||||||| ||| Sbjct 320 AGCGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCC 267 >seq4315 Length=3911 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||||||| || || ||||||||| ||||||||||| || Sbjct 3748 CCTCCCCTGAGGCGGAGCACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 3689 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||| ||||| || ||||| |||||||| ||| ||| Sbjct 3688 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGCCGCTGCTGGTCCGGCGGA 3629 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | ||| |||||| ||||| ||| || | || | | || | || ||| Sbjct 3628 ATCCCCTCCTTGTCCTGGATTTTGGCCTTCACATTG---TCGATGGTGTCCGAGGACTCG 3572 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 3571 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 3518 >seq208788 Length=2051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 20/228 (9%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || |||||||| ||| ||||||||||||||||||||| ||||| ||| Sbjct 1688 AGACGGAGGACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTCCT 1630 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || |||| ||||| || ||||| ||||| | |||||| || ||| | || ||| Sbjct 1629 TCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGCGGGATGCCCTC 1570 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGAC 34085 |||||| ||| ||| || ||||| ||||| ||| || || ||| || Sbjct 1569 CTTGTCCTGAATCTTTGCCT---------TCACATTATCAATAGTGTCCGAGCTTTCCAC 1519 Query 34086 C------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || || || || || || | || ||||||||||| ||||| Sbjct 1518 CTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 1471 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||||||| || ||||| || ||||||||| ||||||||||||| | Sbjct 1469 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTG-C 1411 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | |||| || | |||||| ||||| || ||||| | |||||| || Sbjct 1410 AAGGGTCCTTCCGTCCTCAAGTTGCTTCCCGGCGAAAATCAGCCTCTGCTGGTC 1357 >seq107409 Length=3443 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || |||||||| ||| ||||||||||||||||||||| ||||| ||| Sbjct 1291 AGACGAAGGACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTCCT 1349 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || |||| ||||| || ||||| ||||| | |||||| || ||| | || ||| Sbjct 1350 TCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGCGGGATGCCCTC 1409 Query 34029 TTTGTCCATAATTTTT 34044 |||||| ||||||| Sbjct 1410 CTTGTCCTGAATTTTT 1425 >seq5063 Length=5799 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||| |||||||| |||||||||||||| ||||||||||| || Sbjct 432 CCTCCACGAAGGCGGAGCACAAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGCG 373 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| || || ||||| || || || ||||| |||||||| ||| Sbjct 372 AGGGTGCGACCGTCCTCTAACTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCC 319 >seq380537 Length=500 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| || |||||||||||||| |||||| || ||||||||||| | | Sbjct 223 CCCCCCCTCAGCCTCAAAACCAGATGAAGCGTCGACTCCTTTTGGATGTTGTAATCCG-C 281 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | | | || ||||||||||| || ||||| |||| | ||||||||| Sbjct 282 AAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATC 335 >seq43027 Length=2960 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || ||||||||||| || |||||| || |||||||||||||| Sbjct 1106 CCTCCCCTGAGCCTCAAAACCAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGC- 1048 Query 33961 AATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | | || ||||||||||| || ||||| |||| | ||||||||| Sbjct 1047 AAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGCTGATC 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395145956612050