Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq237122 149 7e-31 seq265020 123 3e-23 seq227082 86.0 7e-12 >seq237122 Length=485 Score = 149 bits (164), Expect = 7e-31 Identities = 312/456 (68%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| |||||||||||||||||||| |||||||| | ||| ||| |||||| Sbjct 462 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCAT 403 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC--CCCAATCTGTTTGAGGAGA 125875 ||||||| ||||||| || ||| || | | ||| | | | | || Sbjct 402 CCAATCAAACGGGTTCT--GAACACCATATACCTTCCCGTACCCTAGCGCTCGCAACAGC 345 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | ||| |||| ||||||| |||| | || |||||| |||| | Sbjct 344 CGATCGGCAACGAACTCGATGTACTGGCTCATCAACGCACCGTTCATCCCGACCAACGCG 285 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || |||||||| ||| ||| || |||| || ||||| || || || ||||| || Sbjct 284 CACGGCAGCGCGTCGCAGACAAACTCCCTCTCGATCTCCACCGCGTCGCGAACGATCGCC 225 Query 125996 T-GAATGGTGTCCACCC-CAGGTCTATTGCGCA--AAGTCTTGAAGAGTTCCACGGCAAA 126051 | || | | ||| | | ||| | | || | || | | | ||| | | ||||| Sbjct 224 TTGACTCGC-TCCTCGCTCAGCT-TCTTTCTCAGGAGGGAGTAAAGCAGGCAA--GCAAA 169 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| ||||| ||||| || ||||| || || || |||||| ||||| ||||| Sbjct 168 GTCGCAGTGCAGACCTTCGTCTCGTGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCAT 109 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| || || ||||| | ||||||||| || || || || ||||||||||| || || Sbjct 108 GAGGCCTCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTC 49 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || ||||| || | |||||||| || ||||| Sbjct 48 GACGCAGGCGAAGGCGATCAGACGCTCGGCGAAGGA 13 >seq265020 Length=820 Score = 123 bits (136), Expect = 3e-23 Identities = 304/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| |||| ||||||||||||||| |||||||| | ||| ||| |||||| Sbjct 462 GTACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCAT 403 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC--CCCAATCTGTTTGAGGAGA 125875 ||||||| ||||||| || || | | | ||| | | | || Sbjct 402 CCAATCAAACGGGTTCT--GAACACCGTACACCTTCCCGTACCCTAGCGCACCCAACAGC 345 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||| | | |||| | |||||| |||| | | Sbjct 344 CGGTCGGCGACGAACTCGATGTATTGACTCATCAAGGCGCCGTTCATCCCGACCAACGCA 285 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 ||||| |||||||| | | ||| || |||| || ||||| || || || ||||| || Sbjct 284 CATGGTAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATAGCC 225 Query 125996 T-GAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | || | | ||| | | ||| | | || | || | | | | || ||| || | Sbjct 224 TTGACTCGC-TCCTCGCTCAGCT-TCTTCCTCAGAAGCGAGTAAAGAAGGCAGGCGAAAT 167 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || || ||||| || ||||| || || || |||||| ||||| ||||||| Sbjct 166 CGCAGTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATGA 107 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || || ||||| | ||||||||| || || || || ||||||||||| || || | Sbjct 106 GGCCTCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGA 47 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 | || ||||| || | |||||||| || ||||| Sbjct 46 CGCAGGCGAAGGCGATCAGACGCTCGGCGAAGGA 13 >seq227082 Length=6038 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| |||||||| || |||||||| ||||| | ||||| ||| | Sbjct 5655 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGTTCTCTCTCATCGTTCCC--A 5712 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | | | || || | | ||| | || ||||| ||||| ||||| ||||| || || Sbjct 5713 CCTCCAAGCCCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAACACAATG 5772 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| | ||| || || || || | ||| || || ||| || || || || Sbjct 5773 CACGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCGCACCCTCGACGCCCCAACTCC 5831 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 ||||||| |||||| || | | || | || || ||| || || || ||| || Sbjct 5832 GACAAACAATTCCACGAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCC 5891 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||| | ||| ||||| | || ||||| || || || || Sbjct 5892 CGCCACGGCCCGGGCCAAAAGAGTCTTTCCAGTACCGGG 5930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594396513007000