Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq237122 149 8e-31 seq265020 114 2e-20 seq227082 84.2 3e-11 seq185790 84.2 3e-11 >seq237122 Length=485 Score = 149 bits (164), Expect = 8e-31 Identities = 313/456 (69%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||||||||||||||||||||| |||||||| | | ||| |||||| Sbjct 462 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCAT 403 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC--CCCAATCTGTTTGAGGAGA 127348 ||||||| ||||||| || ||| || | | ||| | | | | || Sbjct 402 CCAATCAAACGGGTTCT--GAACACCATATACCTTCCCGTACCCTAGCGCTCGCAACAGC 345 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | ||| |||| ||||||| |||| | || |||||| |||| | Sbjct 344 CGATCGGCAACGAACTCGATGTACTGGCTCATCAACGCACCGTTCATCCCGACCAACGCG 285 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||||||| ||| ||| || |||| || ||||| || || || ||||| || Sbjct 284 CACGGCAGCGCGTCGCAGACAAACTCCCTCTCGATCTCCACCGCGTCGCGAACGATCGCC 225 Query 127469 T-GAATAGTGTCCACCC-CAGGT-CTATTGCGTAAAGTCTTGAAG-AGTTCCACAGCAAA 127524 | || | | ||| | | ||| | || | | | | | ||| || || |||||| Sbjct 224 TTGACTCGC-TCCTCGCTCAGCTTCTTTCTCAGGAGGGAGTAAAGCAGG--CA-AGCAAA 169 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| ||||| ||||| || ||||| || || || |||||| || || ||||| Sbjct 168 GTCGCAGTGCAGACCTTCGTCTCGTGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCAT 109 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| || || ||||| | ||||||||| || || || || |||||||||||||| || Sbjct 108 GAGGCCTCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTC 49 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || ||||| || | ||||||||||| ||||| Sbjct 48 GACGCAGGCGAAGGCGATCAGACGCTCGGCGAAGGA 13 >seq265020 Length=820 Score = 114 bits (126), Expect = 2e-20 Identities = 302/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||||| ||||||||||||||| |||||||| | | ||| |||||| Sbjct 462 GTACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCAT 403 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC--CCCAATCTGTTTGAGGAGA 127348 ||||||| ||||||| || || | | | ||| | | | || Sbjct 402 CCAATCAAACGGGTTCT--GAACACCGTACACCTTCCCGTACCCTAGCGCACCCAACAGC 345 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||| | | |||| | |||||| |||| | | Sbjct 344 CGGTCGGCGACGAACTCGATGTATTGACTCATCAAGGCGCCGTTCATCCCGACCAACGCA 285 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 ||||| |||||||| | | ||| || |||| || ||||| || || || ||||| || Sbjct 284 CATGGTAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATAGCC 225 Query 127469 T-GAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526 | || | | ||| | | ||| | | || | | | | | | || || || | Sbjct 224 TTGACTCGC-TCCTCGCTCAGCT-TCTTCCTCAGAAGCGAGTAAAGAAGGCAGGCGAAAT 167 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| || || ||||| || ||||| || || || |||||| || || ||||||| Sbjct 166 CGCAGTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATGA 107 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || || ||||| | ||||||||| || || || || |||||||||||||| || | Sbjct 106 GGCCTCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGA 47 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 | || ||||| || | ||||||||||| ||||| Sbjct 46 CGCAGGCGAAGGCGATCAGACGCTCGGCGAAGGA 13 >seq227082 Length=6038 Score = 84.2 bits (92), Expect = 3e-11 Identities = 188/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||||||| || |||||||| ||||| | ||||| ||| | | Sbjct 5656 AACCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGTTCTCTCTCATCGTTCCC--AC 5713 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | || || | | ||| | || ||||| ||||| || |||||||| || || | Sbjct 5714 CTCCAAGCCCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAACACAATGC 5773 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | ||| || || || || | ||| ||||| ||| || || || || Sbjct 5774 ACGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCGCACCCTCGACGCCCCAACTCCG 5832 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| ||||| || | | || | || || ||| || || || ||| ||| Sbjct 5833 ACAAACAATTCCACGAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCCC 5892 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | ||| ||||| | || ||||| || || || || Sbjct 5893 GCCACGGCCCGGGCCAAAAGAGTCTTTCCAGTACCGGG 5930 >seq185790 Length=5091 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGG 115960 ||||||||||| || ||||||||||||||||||||||| |||||| || |||| || | Sbjct 4646 ATAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATTTGGCTGGTTG 4588 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||||||| ||||| || || | ||||| Sbjct 4587 AGGCTGTAGGCATTGGAGCTACAAGAAG 4560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610470147639000