Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq3 504 1e-137 seq181776 113 7e-20 seq332406 109 8e-19 seq295831 105 1e-17 seq333312 96.9 5e-15 seq1619 91.5 2e-13 >seq3 Length=31233 Score = 504 bits (558), Expect = 1e-137 Identities = 692/967 (72%), Gaps = 0/967 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1641 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1582 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1581 GCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATT 1522 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || || |||||||| || | Sbjct 1521 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 1462 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| ||||||||||| || | ||||| Sbjct 1461 CCTACTTCTGCGGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCTTCTGTTGAT 1402 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||||||||| |||| | | || | | |||||| | ||||| | Sbjct 1401 GAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGTTCTACACTTCTTACTTGGTGTA 1342 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | ||||||||||| || | | | |||||| | |||||||| Sbjct 1341 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 1282 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | |||||| | Sbjct 1281 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATT 1222 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||| | |||||| || ||||||||||| || ||||||| |||| Sbjct 1221 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 1162 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| ||||| |||||||||||||| || ||||||||||| |||||||||||||| ||| Sbjct 1161 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCT 1102 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 1101 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 1042 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | ||||| || | ||||||| ||||| |||||||| Sbjct 1041 ATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 982 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || || ||||| || || ||||| ||||| || | ||||||||||| ||| Sbjct 981 GAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCA 922 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||||||||| || | | | ||||||||||| || || | ||||| | |||| Sbjct 921 AGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATT 862 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| || || | ||| | |||||||| |||||| | || ||||| || ||||| Sbjct 861 TGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAAT 802 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| || ||| ||||||||| || | ||||| | Sbjct 801 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 742 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| |||||||||||||| ||||| |||||||| ||||| | Sbjct 741 GCTAATCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCATAACTTCCCTCTAGACCTA 682 Query 216275 GCTGCTG 216281 |||| || Sbjct 681 GCTGGTG 675 >seq181776 Length=4072 Score = 113 bits (124), Expect = 7e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 215822 CTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCT 215881 || ||||||||||| |||||||||||||| |||||||| ||||| | || | ||| | Sbjct 4070 CTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCAGCTCCCTATTCAGT 4011 Query 215882 GCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCT 215941 || ||||| ||||| | || || ||| | | ||||| || || || || | |||||| Sbjct 4010 GCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 3951 Query 215942 CAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACAC 216001 || | |||||| ||||| |||||||| ||||| || || || ||| | || || Sbjct 3950 GTTAATGAAAGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAACCGCTCAT 3891 Query 216002 GGTTA 216006 ||||| Sbjct 3890 GGTTA 3886 >seq332406 Length=435 Score = 109 bits (120), Expect = 8e-19 Identities = 200/290 (69%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 216002 GGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT--C 216059 ||||| ||||| || | ||||||||||| ||| ||||||||| || | |||| | Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTC--ATTCTTTAC 58 Query 216060 ACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAA 216119 |||||||||| || || | ||| | | |||| | | || || | ||| | Sbjct 59 ACTTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTACCGCTTTAGGTATTAGCG 118 Query 216120 CTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGC---ATCTG 216176 ||||||| |||||| | | ||||| || ||||| || | ||| || || | || Sbjct 119 CTATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCTC 178 Query 216177 GTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAA 216236 || || ||| ||||||||| || | ||||| | || ||||||||| |||| | Sbjct 179 GT---GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTA 235 Query 216237 TGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||||||||||| ||||| ||||||| ||||| | | || || |||| Sbjct 236 TGCACGAGCGTAATGCTCATGACTTCCCTGTAGACCTAGTTGGTGTTGAA 285 >seq295831 Length=1525 Score = 105 bits (116), Expect = 1e-17 Identities = 187/269 (70%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || | | | ||| |||| ||||||| ||| | ||||| ||| | | | | Sbjct 1247 ACTGAAAACCATCTTTACATTGGATGGTTTGTTGTTTTGATGATCCCTACCTTATTGACC 1306 Query 215375 GCTACCACTTGT-TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || || |||| || || | || ||||| ||||| ||||| | ||||| || || | Sbjct 1307 GCAACTT-TTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGATAGATATTGATGGTGT 1365 Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493 | || || ||| ||| || || | ||||| ||||| || || |||||||| || | Sbjct 1366 TCGTGAACCTGTTTTTGGATCCCTACTTTATGGAAACAATATTATTTCTGGTGCCATTAT 1425 Query 215494 ACCTAGTTCAAACGCAATC---GGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGT 215550 |||| || ||||| || || ||||| ||||| ||||||||||| || | || Sbjct 1426 TCCTACTTTT---GCAATTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCTTCTGT 1482 Query 215551 TGACGAATGGCTCTACAATGGTGGACCTT 215579 ||| |||||| | |||||||| || |||| Sbjct 1483 TGATGAATGGTTATACAATGGAGGTCCTT 1511 >seq333312 Length=291 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 215684 TACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGT 215743 || || || ||||| | | ||| ||| || ||| | | |||||| | |||| || Sbjct 146 TATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATCTATCCAATTAGTCAAGGA 87 Query 215744 TCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTC 215803 || ||||| | |||||| || ||||||||||| || ||||||| |||| |||| ||| Sbjct 86 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 27 Query 215804 CAGGCTGAGCACAACATTCTGATGCA 215829 || |||||||||||||| || ||||| Sbjct 26 CAAGCTGAGCACAACATCCTTATGCA 1 >seq1619 Length=8420 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/263 (69%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 215317 TGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGC 215376 ||| |||||| | ||| |||| ||||||||||| | ||||| ||| ||| | | | Sbjct 2785 TGAAAATCGTCTTTACATTGGATGGTTTGGTGTTGTGATGATCCCTA-CCTTATGACTCC 2843 Query 215377 TACCACTTGT-TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCA 215435 || |||| || || | || || || ||||| |||| || ||||| || || || Sbjct 2844 AACTT-TTGTATTTATTATCGCTTTTATTGCTGC-CCTCTAGTAGATATTGATGGTATTC 2901 Query 215436 GAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTAC 215495 | || | ||| ||| ||| || | ||| | ||||| || || | |||| | || | | Sbjct 2902 GTGAACTTGTTTTTGGATCTCTACTTTATAGAAACAATATTATTTTTGGTTTTATTATTC 2961 Query 215496 CTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACG 215555 ||| ||| | || || || ||||| ||| | ||||| ||| || | ||||| | Sbjct 2962 CTACTTCTGCAACTATAGGTTTGCACTTTTACTCAATCTGAAAAGTGGCTTCTGTTGATG 3021 Query 215556 AATGGCTCTACAATGGTGGACCT 215578 ||||||| ||||||||||| ||| Sbjct 3022 AATGGCTATACAATGGTGGTCCT 3044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741393213242000