Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3 544 9e-150 seq332406 125 8e-24 seq333312 122 1e-22 seq181776 95.1 1e-14 seq295831 91.5 2e-13 seq371407 89.7 6e-13 >seq3 Length=31233 Score = 544 bits (602), Expect = 9e-150 Identities = 702/969 (72%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1653 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1594 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | |||||||| || || || || || || Sbjct 1593 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGAT 1534 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || ||| Sbjct 1533 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCT 1474 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || || |||||||| Sbjct 1473 GGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCG 1414 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 || || | ||||| ||||| || || |||||||||||| | ||| || | | |||||| Sbjct 1413 GCTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGTTCTACACTTC 1354 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 1353 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1294 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 1293 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 1234 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | ||||| | ||||| ||| || || ||||| ||||||||||| ||||| ||||| Sbjct 1233 ATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACT 1174 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | ||||||||||| ||||||||||| |||||||||||||| || ||| Sbjct 1173 TTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATG 1114 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 1113 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 1054 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 1053 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTC 994 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || ||||| || || ||||| || ||||| || | ||| Sbjct 993 GGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 934 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 ||||||||||| || || |||||| |||| | | ||||||||||| ||| | | ||| Sbjct 933 TTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCT 874 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| || | | |||||| |||| ||||| || ||| | ||||| Sbjct 873 GTAGTAGGTATTTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGT 814 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 ||||| ||||| || || | || ||| | ||| ||| || ||| ||||| || Sbjct 813 TTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGAT 754 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | ||||| | || || || ||||||||||| ||||| ||||||||||| || |||||| Sbjct 753 ATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCATAACTTC 694 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 693 CCTCTAGAC 685 >seq332406 Length=435 Score = 125 bits (138), Expect = 8e-24 Identities = 188/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCAC 170457 || || ||||| || | |||||||||||||| || || |||||| || | | | ||| Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAC 60 Query 170458 TTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACA 170517 |||||||| ||| | | ||| ||||| | || | ||| || | | |||||| || | Sbjct 61 TTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTACCGCTTTAGGTATTAGCGCT 120 Query 170518 ATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGG---ATCTGGT 170574 ||||| || ||| | |||| ||||| ||||| || | | || ||| | | || || Sbjct 121 ATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCTCGT 180 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 ||| || ||| ||||| || | ||||| | || || || |||||| |||| ||| Sbjct 181 ---GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTATG 237 Query 170635 CATGAGCGTAATGCACACAACTTCCC 170660 || ||||||||||| || ||||||| Sbjct 238 CACGAGCGTAATGCTCATGACTTCCC 263 >seq333312 Length=291 Score = 122 bits (134), Expect = 1e-22 Identities = 200/284 (70%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 169948 GATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGA 170007 ||||| ||||| || || |||||||||||| | ||| || | |||||| | | || Sbjct 283 GATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGCTCTACACTTCTTACTTGGT 224 Query 170008 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT-ATGCGTC---- 170062 | || || |||||| |||||||||| | | || | ||| ||| || Sbjct 223 GTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCTGTCTGGGTCATGAGTGGGAA 164 Query 170063 CTTGGATCT-GTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTG 170121 ||| | | | || | | ||||| ||||| || ||| || ||||| ||||| | Sbjct 163 CTTAGTTTTCGTCTGGG-TATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATC 105 Query 170122 TATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTT 170181 ||||| | |||| ||| || || ||||| ||||||||||| ||||| ||||| || Sbjct 104 TATCCAATTAGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTC 45 Query 170182 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 170225 ||||||||| | ||||||||||| ||||||||||| |||||||| Sbjct 44 AACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1 >seq181776 Length=4072 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 170218 CTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCA 170277 |||||||||||||| || ||| ||| || |||||| | ||||| | | || ||| Sbjct 4070 CTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCAGCTCCCTATTCAGT 4011 Query 170278 GCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337 || ||||| ||||| | ||||| ||| | | ||||| || || ||||| || || || Sbjct 4010 GCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 3951 Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || | | |||| |||||| ||||| |||||||| || || ||||| | || ||| Sbjct 3950 GTTAATGAAAGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAACCGCTCAT 3891 Query 170398 GGATA 170402 || || Sbjct 3890 GGTTA 3886 >seq295831 Length=1525 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTC 169762 |||| ||||| | |||| | || |||| ||||| | ||| ||||||||||| Sbjct 1239 TAACCAGCACTGAAAACCATCTTTACATTGGATGGTTTGTTGTTTTGATGATCCCTACCT 1298 Query 169763 TATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCG 169822 |||| | ||| | ||||| | |||||||| || || || || | || || | Sbjct 1299 TATTGACCGCAACTTTTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGATAGATATTG 1358 Query 169823 ATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTG 169882 |||| | | |||||||| || || | | ||||| ||||| || || ||||||| Sbjct 1359 ATGGTGTTCGTGAACCTGTTTTTGGATCCCTACTTTATGGAAACAATATTATTTCTGGTG 1418 Query 169883 CAGTTGTTCCATCTT---CAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAG 169939 | || |||| ||| ||| || ||| | ||||| || || || |||||||| | Sbjct 1419 CCATTATTCCTACTTTTGCAA---TTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGG 1475 Query 169940 CAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTT 169986 | || | ||||| ||||| || || || ||||||||| | ||| || Sbjct 1476 CTTCTGTTGATGAATGGTTATACAATGGAGGTCCTTATGAGTTAATT 1522 >seq371407 Length=281 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 169906 ATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAAC 169965 || ||| | || || || || || |||||||| | || | ||||| ||||| || || Sbjct 194 ATAGGTTTGCATTTTTACCCAATCTGGGAAGCGGTT-CTGTTGATGAATGGTTATACAAT 136 Query 169966 GGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGT 170025 |||||||||||| ||| || | | |||||| | | || | || || |||||| Sbjct 135 GGTGGTCCTTATGTGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 76 Query 170026 AGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCT 170085 | |||||||||| | ||| |||||||||| |||||||| ||| |||||||| Sbjct 75 CGTGAGTGGGAACTTAGTTTTCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCA 16 Query 170086 GCTCCAGTGTCAGC 170099 ||||| || |||| Sbjct 15 GCTCCTGTTGCAGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579962720260000