Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3 479 8e-131 seq332406 129 2e-25 seq333312 89.7 2e-13 seq295831 87.8 5e-13 seq371407 80.6 8e-11 >seq3 Length=31233 Score = 479 bits (530), Expect = 8e-131 Identities = 698/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1662 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1603 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| | || ||||| || || || Sbjct 1602 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCC 1544 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 1543 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1484 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || |||||||| || Sbjct 1483 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTACCCAAT 1424 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 ||||||||| | | | || || ||| |||||||||| || || ||| | | ||| | Sbjct 1423 CTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGT 1364 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||||||||| | || ||||| ||| || | |||||||||| || | | Sbjct 1363 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1304 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 1303 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1244 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | ||||| | || ||||| || ||| ||| || |||||||| || || Sbjct 1243 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 1184 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 |||||||||||| ||||| ||| | ||||||||||| || || || || || |||||||| Sbjct 1183 CTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 1124 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||| || ||| ||||| ||||| || ||||| || | || ||| ||||||||| || Sbjct 1123 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1064 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 1063 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGG 1004 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || | || || ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 1003 TTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGG 944 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 |||| || || || ||||| ||||| || || |||||| | || ||||| || || Sbjct 943 CCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGC 884 Query 26581 TACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAA 26640 | ||||||| || || || || ||| | || || | ||||| |||| ||||| || || Sbjct 883 TGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAA 824 Query 26641 CCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTAC 26700 | ||||||||||||| || || || || ||||| ||| | | || |||| ||| Sbjct 823 CTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 764 Query 26701 ATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGC 26760 ||||||||| | | ||||| ||||| || || | ||||||||||||||||||||||| Sbjct 763 TTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCACGAGCGTAATGC 704 Query 26761 TCATAACTTTCCACTTGACTTAGC 26784 ||||||||| || || ||| |||| Sbjct 703 TCATAACTTCCCTCTAGACCTAGC 680 >seq332406 Length=435 Score = 129 bits (142), Expect = 2e-25 Identities = 193/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 26510 GGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCAT 26569 || || ||||| |||| || || || ||||| ||||| || || | |||| | || Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAC 60 Query 26570 TTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACA 26629 ||||| || ||| ||||||| | || || || | | | || || | ||||| || | Sbjct 61 TTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTACCGCTTTAGGTATTAGCGCT 120 Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAG 26689 ||||| || ||| || |||||||||| || || || | ||||| ||| | | | Sbjct 121 ATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCTCGT 180 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 |||| ||| ||||||||| | | ||||| ||||| || || | ||||||||||| Sbjct 181 GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTATGCAC 240 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAG 26783 ||||||||||||||| |||| || | ||| ||| Sbjct 241 GAGCGTAATGCTCATGACTTCCCTGTAGACCTAG 274 >seq333312 Length=291 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | ||||| | | ||||| || ||| ||| || |||||||| || Sbjct 119 GCTGTTTTCTTGATCTATCCAATTAGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 60 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 |||||||||||||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 59 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1 >seq295831 Length=1525 Score = 87.8 bits (96), Expect = 5e-13 Identities = 189/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || ||||| |||| ||| || | |||||||| | || | ||||| || |||| Sbjct 1241 ACCAGCACTGAAAACCATCTTTACATTGGATGGTTTGTTGTTTTGATGATCCCTACCTTA 1300 Query 25877 CTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGA 25935 | | || ||| ||| ||||| | || ||||| || || || || ||||||| || Sbjct 1301 TTGACCGCAACTTT-TGTATTTATTATCGCTTTCATTGCTGCCCCTCCGATAGATATTGA 1359 Query 25936 TGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||| | ||||| || |||| || || || | || ||||||||||| || || || || Sbjct 1360 TGGTGTTCGTGAACCTGTTTTTGGATCCCTACTTTATGGAAACAATATTATTTCTGGTGC 1419 Query 25996 AGTCGTCCCCTCCTCTAACGCA---ATCGGACTACATTTTTACCCGATCTGGGAAGCTGG 26052 | | ||| || | ||| || || | || |||||||| ||||||||||| | Sbjct 1420 CATTAT-TCCTACTTT--TGCAATTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGC 1476 Query 26053 CACACTGGACGAGTGGCTATACAATGGCGGACCATAT 26089 | | || || ||| |||||||||| || || ||| Sbjct 1477 TTCTGTTGATGAATGGTTATACAATGGAGGTCCTTAT 1513 >seq371407 Length=281 Score = 80.6 bits (88), Expect = 8e-11 Identities = 124/176 (70%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 26027 CATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCA 26086 ||||||||||| ||||||||||| || | | || || ||| |||||||||| || || Sbjct 185 CATTTTTACCCAATCTGGGAAGC-GGTTCTGTTGATGAATGGTTATACAATGGTGGTCCT 127 Query 26087 TATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGG 26146 ||| | ||| | | ||||||||| | || ||||| ||| || | ||||| Sbjct 126 TATGTGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 67 Query 26147 GAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACC 26202 ||||| || | ||||| ||| | || ||||| |||||||||| |||| || Sbjct 66 GAACTTAGTTTTCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146036375544600