Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3 554 1e-153 seq295831 127 6e-25 seq333312 107 6e-19 seq303336 91.5 4e-14 seq371407 80.6 8e-11 >seq3 Length=31233 Score = 554 bits (614), Expect = 1e-153 Identities = 715/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||| |||||||| || |||||||| |||||||||||||| || Sbjct 680 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCCATACCAAGATTA 739 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || ||| |||||||| || | | ||| | ||||| || || Sbjct 740 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 799 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 |||||||| ||||| || || | || |||||||||||| || || | || ||||| | Sbjct 800 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTAAAC 859 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | || || ||||||| ||| |||||||| |||||| ||| |||||| || Sbjct 860 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 919 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 920 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 979 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||||||||| |||||| | || || | || || | | || ||||| | Sbjct 980 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 1039 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | |||||| || | |||||||||||| ||| | | || |||||||| Sbjct 1040 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1099 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 ||||| ||||| | |||||| || || ||||||||||| ||||| || || |||||||| Sbjct 1100 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 1159 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGT 5734 | ||| ||||| |||||||||||||| || ||||||||||| ||| || ||||| || Sbjct 1160 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 1219 Query 5735 CCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 || | || || | || || || | |||| || || ||||| || ||||||||||| || Sbjct 1220 CCAATTGGATAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAAC 1278 Query 5794 GCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGC 5853 |||||| || ||||| || | | | ||||||||||||| | || |||| ||| Sbjct 1279 AGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 1338 Query 5854 TGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCA 5913 || | ||||| | |||||| | || | | | || || || |||||||| | ||| Sbjct 1339 AGCTACACCAAGTAAGAAGTGTAGAACAATTAACTCATAAGGACCACCATTGTATAACCA 1398 Query 5914 TTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCT 5973 |||||| | | || ||||||||||| || || ||||| || || || || || | Sbjct 1399 TTCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCCGCAGAAGT 1458 Query 5974 GGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTC 6033 || | || ||| || || || || ||||||||||| ||||||||||| | || ||||| Sbjct 1459 AGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 1518 Query 6034 ACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGT 6093 ||| || || || || || || || || ||||| | ||| || | |||||| ||| ||| Sbjct 1519 ACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGT 1578 Query 6094 TGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTT 6153 |||||| || | | || ||||| || ||||||||||| || | || || ||||| | Sbjct 1579 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1638 Query 6154 GGTGCTAGTAACCCAGTCACAGAA 6177 ||||| || | ||||| |||||| Sbjct 1639 AGTGCTGGTTATCCAGTTACAGAA 1662 >seq295831 Length=1525 Score = 127 bits (140), Expect = 6e-25 Identities = 203/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || ||||||||||| | ||||||||| | | || ||||||||||| || || ||| Sbjct 1512 TAAGGACCTCCATTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAG 1453 Query 5951 TGTAACCC---AATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCA 6007 || || || |||||| | | || | || ||| || || || || ||||||||| Sbjct 1452 TGCAAACCTATAATTGCAAAAG---TAGGAATAATGGCACCAGAAATAATATTGTTTCCA 1396 Query 6008 TAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCT 6067 || ||||| ||||| || |||||||| | || || || || | || || ||||| Sbjct 1395 TAAAGTAGGGATCCAAAAACAGGTTCACGAACACCATCAATATCTATCGGAGGGGCAGCA 1336 Query 6068 ACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCA 6127 | ||| || | |||||| || ||||||||| || | | || ||||| || ||| || Sbjct 1335 ATGAAAGCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAACA 1276 Query 6128 AACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| || | || || |||| | ||||| || | | ||| | |||| Sbjct 1275 AACCATCCAATGTAAAGATGGTTTTCAGTGCTGGTTATCTAGTTATAGAA 1226 >seq333312 Length=291 Score = 107 bits (118), Expect = 6e-19 Identities = 198/285 (69%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 5642 TGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 5701 ||||||||||| ||||| || || |||||||| | ||| ||||| |||||||||||||| Sbjct 1 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATT 60 Query 5702 CCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-A 5760 || ||||||||||| ||| || ||||| || | | || || | || || || | | Sbjct 61 CCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACTAATTGGATAGATCAAGAAAACAGCA 120 Query 5761 GTAGGCTGCGGCAACCGGTGCTGAATATGC-TACGCAAATCCATGGTCGCATT-----CC 5814 ||| || | ||||| || |||||||| | ||| ||| | | | || || | || Sbjct 121 GTA-GCAACTGCAACAGGAGCTGAATACCCAGACG-AAAACTAAGTTCCCACTCATGACC 178 Query 5815 TAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTG 5874 | | | ||||||||||||| | | |||| ||| || | ||||| | |||||| Sbjct 179 CAGACAGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTG 238 Query 5875 GAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 | | | | | || || || |||||||| | ||||||||| Sbjct 239 TAGAGCAATTAACTCATAAGGACCACCATTGTATAACCATTCATC 283 >seq303336 Length=741 Score = 91.5 bits (100), Expect = 4e-14 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || ||||||||||| ||||||||||| | | |||||||| || Sbjct 728 AATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAATAGGTTCACGAAT 669 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || | || | || | ||| | ||| | | |||||| ||| ||||||||| Sbjct 668 ACCATCAATATGTACCAGAGGGGTAGCAATGAAAGTGATAATAAATACAGAAGTTGCGGT 609 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCT 6159 || | | || ||||| || ||||||||||| || | || || | ||| | ||||| Sbjct 608 TAGTAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACAGTTTTCAGTGCT 549 Query 6160 AGTAACCCAGTCACAGAA 6177 | | | ||| ||| || Sbjct 548 GATTATCTAGTTACAAAA 531 >seq371407 Length=281 Score = 80.6 bits (88), Expect = 8e-11 Identities = 135/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 5768 GCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTA 5827 || ||||| || ||||||||||| || |||||| || ||||| |||| | ||||| Sbjct 2 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCTAGACGAAAACTA 61 Query 5828 AGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGT 5887 |||||||| | || |||| ||| || | ||||| | |||||| | || | | Sbjct 62 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAAC 121 Query 5888 TGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAG 5947 || || || |||||||| | ||||||||| | | | ||||||||||| || || Sbjct 122 ACATAAGGACCACCATTGTATAACCATTCATCAACA-GAACCGCTTCCCAGATTGGGTAA 180 Query 5948 AAGTGTAACCCAAT 5961 || || || || || Sbjct 181 AAATGCAAACCTAT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151931719938150