Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3 515 1e-141 seq333312 120 9e-23 seq332406 120 9e-23 seq295831 105 2e-18 seq371407 86.0 2e-12 seq137405 84.2 7e-12 >seq3 Length=31233 Score = 515 bits (570), Expect = 1e-141 Identities = 704/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || |||||||| |||||||||||||| || | | Sbjct 680 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCCATACCAAGATTA 739 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 740 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 799 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 |||||||| ||||| || || | || |||||||||||| | || | |||||||| | Sbjct 800 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTAAAC 859 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| |||||||| |||||| ||| ||| || || Sbjct 860 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 919 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 920 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 979 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || |||||| | || ||||| | Sbjct 980 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 1039 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 1040 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1099 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 1100 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 1159 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || |||||||| || || || || ||||||||||| ||||| || || ||||| Sbjct 1160 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 1219 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| || |||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 1220 CCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1279 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| ||| Sbjct 1280 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1339 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| | | ||| || ||||| || || ||||| Sbjct 1340 GCTACACCAAGTAAGAAGTGTAGAACAATTAACTCATAAGGACCACCATTGTATAACCAT 1399 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | | || ||||||||||||||||| ||||| | ||| || || ||| | Sbjct 1400 TCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCCGCAGAAGTA 1459 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || || ||||||||||| |||| | ||| || ||||| ||| Sbjct 1460 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1519 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | | Sbjct 1520 CGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 1579 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1580 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1639 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||||| ||| || Sbjct 1640 GTGCTGGTTATCCAGTTACAGAA 1662 >seq333312 Length=291 Score = 120 bits (132), Expect = 9e-23 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 25900 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 25959 ||||||||||| ||||| || || || || |||| ||| || |||||||| || || || Sbjct 1 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATT 60 Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || ||||||||||| ||||| || || ||||| | || || |||| ||||| |||||| Sbjct 61 CCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACTAATTGGATAGATCAAGAAAACAGCA 120 Query 26020 AATGCTGCTGCAACAGGGGCTGAATA 26045 || |||||||||| |||||||| Sbjct 121 GTAGCAACTGCAACAGGAGCTGAATA 146 >seq332406 Length=435 Score = 120 bits (132), Expect = 9e-23 Identities = 191/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 25454 CTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGG 25513 ||| ||| | |||||||| || || |||||||| |||||||||| ||| || | | | Sbjct 274 CTAGGTCTACAGGGAAGTCATGAGCATTACGCTCGTGCATAACTTTCATACCAAGATTAG 215 Query 25514 CACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACT 25573 ||||||||| || ||||||||||| | || | | | |||||| || | | Sbjct 214 CACGGTTAATGATATCAGCCCAAGTATTAATTACACGAGCTTGACTATCAACTACAAATT 155 Query 25574 GATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCC 25633 ||||||| ||||| || | | || |||||||||| | | || | |||||||| | Sbjct 154 GATTGAAATTAAAACCATCTAAGTTGAAAGCCATAGCGCTAATACCTAAAGCGGTAAACA 95 Query 25634 ATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGC 25693 | || | | ||||||||||| |||||||| |||||| | | ||| || || | Sbjct 94 AAATACCTACTATAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAATGAGAATTGTTGAAAC 35 Query 25694 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCC 25727 | ||||| |||||||| | || ||||| || || Sbjct 34 TTGCATATTGGAAGATCAATCGGCCAAAATAACC 1 >seq295831 Length=1525 Score = 105 bits (116), Expect = 2e-18 Identities = 180/260 (69%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| | | ||| || || || || || ||||| || || | | || ||||||||| Sbjct 1524 ACAATTAACTCATAAGGACCTCCATTGTATAACCATTCATCAACAGAAGCCGCTTCCCAG 1465 Query 26197 ATTGGGTAGAAGTGAAGACCGAT---TGCGTTAGATGACGGGACGATTGCCCCTGAGATG 26253 |||||||| ||||| | ||| || ||| | | | || | || || || || || Sbjct 1464 ATTGGGTAAAAGTGCAAACCTATAATTGC---AAAAGTAGGAATAATGGCACCAGAAATA 1408 Query 26254 ATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACG 26313 || ||||||||||| |||| | ||| | ||||| ||||||| |||||| ||||| | Sbjct 1407 ATATTGTTTCCATAAAGTAGGGATCCAAAAACAGGTTCACGAACACCATCAATATCTATC 1348 Query 26314 GGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATC 26373 ||||| ||||||| || || || | |||| | ||| || || | | ||||||| Sbjct 1347 GGAGGGGCAGCAATGAAAGCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATC 1288 Query 26374 ATTAGTACCCCAAACCACCC 26393 || | || ||||||| || Sbjct 1287 ATCAAAACAACAAACCATCC 1268 >seq371407 Length=281 Score = 86.0 bits (94), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 26026 GCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTA 26085 ||||||||||| |||||||| || ||| ||||| || | ||| ||||| | | ||||| Sbjct 2 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCTAGACGAAAACTA 61 Query 26086 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGT 26145 |||||||| | || |||| ||| | | || | | ||||| | ||||| | Sbjct 62 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAAC 121 Query 26146 TGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 26205 ||| || ||||| || || ||||| || || | | | ||||||||||||||||| Sbjct 122 ACATAAGGACCACCATTGTATAACCATTCATCAACAG-AACCGCTTCCCAGATTGGGTAA 180 Query 26206 AAGTGAAGACCGAT 26219 || || | ||| || Sbjct 181 AAATGCAAACCTAT 194 >seq137405 Length=2057 Score = 84.2 bits (92), Expect = 7e-12 Identities = 195/293 (67%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 25483 CGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGG 25542 |||||||||||||||| ||| | | | |||| |||||| || ||||||||||| Sbjct 1109 CGCTCATGCATAACTTTCATACGAAGATTGGCATGGTTAATGATATCAGCCCAAGTATTA 1050 Query 25543 ACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAA 25602 | || | || | |||| | || | | |||||| ||||| | || | |||||| Sbjct 1049 ATTACACAACCTTGACCATCAGCTACAAAGTAATTGAAATTAAAATCCTTTAAGTTAAAA 990 Query 25603 GCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGG 25662 ||| ||||| | | | ||||||| || | | | || |||||||| | | Sbjct 989 GCCGTAGTGCTAATATCTAAGGCGGTAAACCCAGTACCTATTACAAGCCAAGCAACTGGA 930 Query 25663 AAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAG 25722 ||||| |||||| ||| ||| || || | || |||||||| | || ||||| Sbjct 929 AAGAAGTGTAAAGAACGAGAATTGTTGAAATTTTTATGTTGGAAGATCAATCGGCCAAAA 870 Query 25723 TAGCCATGAGCCGCAACAATGTTATACG-TCTCTTCTTCTTGGCCGAATTTAT 25774 || |||| ||| || |||| ||||| | | | ||| | ||| ||||| ||| Sbjct 869 TAACCATAAGCGGCTACAACATTATAGGTTTTTTTCCTTTTGATCGAATATAT 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151278804972900