Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3 531 2e-146 seq295831 132 1e-26 seq371407 105 2e-18 seq333312 104 7e-18 seq332406 104 7e-18 seq303336 91.5 4e-14 seq1619 87.8 5e-13 >seq3 Length=31233 Score = 531 bits (588), Expect = 2e-146 Identities = 715/989 (72%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 679 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCCATACCAAGATT 738 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 739 AGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA-- 796 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||| ||||| || || ||||| | || |||||||||||| || || | || ||| Sbjct 797 -GATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 855 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||||||||| | |||||| |||| | | |||||| Sbjct 856 AAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 915 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || || ||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 916 GAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 975 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || || ||| || || ||||| Sbjct 976 GGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTC 1035 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 1036 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1095 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || || ||||||||||| ||||| || |||||||| Sbjct 1096 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 1155 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || ||||||||||| ||||| || || || Sbjct 1156 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 1215 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| ||||| | | ||||| || | || | |||||||| || || || ||||| Sbjct 1216 TTGACCAATTGGATAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 1273 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| ||||||||||| || | ||||||||||||| | || ||||| Sbjct 1274 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATA 1333 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | ||||| | ||||| | | ||| || || || || ||| Sbjct 1334 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAACTCATAAGGACCACCATTGTAT 1393 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | | || ||||||||||||||||| ||||| | ||| || || | Sbjct 1394 AACCATTCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCCGCA 1453 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || || || || || ||||||||||| |||| | ||| || ||| Sbjct 1454 GAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACA 1513 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || ||||| ||||||| || || || | |||| | Sbjct 1514 GGTTCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA 1573 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 1574 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1633 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||||| ||| || Sbjct 1634 TTTTCAGTGCTGGTTATCCAGTTACAGAA 1662 >seq295831 Length=1525 Score = 132 bits (146), Expect = 1e-26 Identities = 195/275 (71%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| | | ||| || ||||| || |||||||| || || | | || ||||||||| Sbjct 1524 ACAATTAACTCATAAGGACCTCCATTGTATAACCATTCATCAACAGAAGCCGCTTCCCAG 1465 Query 18579 ATTGGGTAGAAGTGAAGACCGAT---TGCGTTAGATGACGGGACGATTGCCCCTGATATG 18635 |||||||| ||||| | ||| || ||| | | | || | || || || || || Sbjct 1464 ATTGGGTAAAAGTGCAAACCTATAATTGC---AAAAGTAGGAATAATGGCACCAGAAATA 1408 Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 || ||||||||||| |||| || ||| | ||||| ||||||| |||||| || || | Sbjct 1407 ATATTGTTTCCATAAAGTAGGGATCCAAAAACAGGTTCACGAACACCATCAATATCTATC 1348 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATC 18755 ||||| ||||||| || || || | |||| | || |||||| || | | ||||||| Sbjct 1347 GGAGGGGCAGCAATGAAAGCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATC 1288 Query 18756 ATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || | || ||||||| || | ||| || |||| Sbjct 1287 ATCAAAACAACAAACCATCCAATGTAAAGATGGTT 1253 >seq371407 Length=281 Score = 105 bits (116), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 18407 AGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACT 18466 |||||| || || || ||||| |||||| |||||| |||||||||||||| | | |||| Sbjct 1 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCTAGACGAAAACT 60 Query 18467 AAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAG 18526 ||||||||| | || ||||| ||| || | || | | ||||| | ||||| | Sbjct 61 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAA 120 Query 18527 TTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 18586 ||| || || || || |||||||| || || | | | ||||||||||||||||| Sbjct 121 CACATAAGGACCACCATTGTATAACCATTCATCAACAG-AACCGCTTCCCAGATTGGGTA 179 Query 18587 GAAGTGAAGACCGAT 18601 || || | ||| || Sbjct 180 AAAATGCAAACCTAT 194 >seq333312 Length=291 Score = 104 bits (114), Expect = 7e-18 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 ||||||||||| ||||| || ||||||||||| | |||||| ||||||||||| || Sbjct 1 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATT 60 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG- 18399 || ||||||||||| ||||| || || ||||| | || ||||| | | ||||| || | Sbjct 61 CCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACTAATTGGATAGATCAAGAAA-ACAGC 119 Query 18400 AGAAGGCAGCTGCTACTGGTGCGGAATA 18427 || | ||| |||| || || || ||||| Sbjct 120 AGTA-GCAACTGCAACAGGAGCTGAATA 146 >seq332406 Length=435 Score = 104 bits (114), Expect = 7e-18 Identities = 187/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 |||| ||||||| |||||||||||||||||||||||||| | ||||| ||||| | | Sbjct 269 TCTACAGGGAAGTCATGAGCATTACGCTCGTGCATAACTTTCATACCAAGATTAGCACGG 210 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAATGGATTGG 17957 || | | |||||||| ||| | || | || | | | |||||| |||| Sbjct 209 TTAATGATATCAGCCCAAGTATTAATTACACGAGCTTGACTATCAACTACAA---ATTGA 153 Query 17958 TTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCAT 18017 ||||| || || |||| | || |||||||||| | || || | || ||||| | | Sbjct 152 TTGAAATTAAAACCATCTAAGTTGAAAGCCATAGCGCTAATACCTAAAGCGGTAAACAAA 93 Query 18018 ATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTA 18077 || | | ||||||||||| | |||||| |||| | |||||| || || Sbjct 92 ATACCTACTATAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAATGAGAATTGTTGAAACTT 33 Query 18078 GCATACTGGAAGATGAGTCTCCCAAAGTAGCC 18109 ||||| |||||||| | || ||||| || || Sbjct 32 GCATATTGGAAGATCAATCGGCCAAAATAACC 1 >seq303336 Length=741 Score = 91.5 bits (100), Expect = 4e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 18621 ATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATA 18680 || || || || || || ||||||||||| |||| | ||| || | ||| ||||||||| Sbjct 727 ATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAATAGGTTCACGAATA 668 Query 18681 CCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTT 18740 ||||| || | || |||| | ||||| || | || | |||| | | || ||||||| Sbjct 667 CCATCAATATGTACCAGAGGGGTAGCAATGAAAGTGATAATAAATACAGAAGTTGCGGTT 608 Query 18741 AAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 | | | ||||||||| | || |||||||| || | ||| || | ||| Sbjct 607 AGTAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACAGTT 558 >seq1619 Length=8420 Score = 87.8 bits (96), Expect = 5e-13 Identities = 217/327 (66%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 18464 ACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAAT 18523 |||||||||||| | | | ||| ||| || | || | | ||||| | ||||| Sbjct 3113 ACTAAGTTCCCACTCATGGCTCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 3054 Query 18524 GAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 18583 | | || || || || || |||| ||| || || | | || ||| ||||||| Sbjct 3053 TAACTCATTAGGACCACCATTGTATAGCCATTCATCAACAGAAGCCACTTTTCAGATTGA 2994 Query 18584 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643 ||| ||||| | ||| || | ||| | || | || || | || || ||||| Sbjct 2993 GTAAAAGTGCAAACCTATAGTTGCAGAAGTAGGAATAATAAAACCAAAAATAATATTGTT 2934 Query 18644 TCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGC 18703 || ||| |||| | ||| | ||| | |||||||||||||| || || || |||| || Sbjct 2933 TCTATAAAGTAGAGATCCAAAAACAAGTTCACGAATACCATCAATATCTACTAGAGG-GC 2875 Query 18704 AGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTAC 18763 ||||| ||| || || | |||| | || || || | ||| | ||||||||| | || Sbjct 2874 AGCAATAAAAGCGATAATAAATACAAAAGTTGGAGTCATAAG-GTAGGGATCATCACAAC 2816 Query 18764 CCCAAACCACCCCACGTAGAGGCGGTT 18790 |||||||| || | ||| || || || Sbjct 2815 ACCAAACCATCCAATGTAAAGACGATT 2789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150606780301350