Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09]
396,025 sequences; 631,307,653 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq3 500 3e-137
seq332406 136 1e-27
seq333312 113 1e-20
seq295831 102 2e-17
seq371407 98.7 3e-16
seq137405 95.1 4e-15
>seq3
Length=31233
Score = 500 bits (554), Expect = 3e-137
Identities = 703/984 (71%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || ||||| ||||| || || | ||||| ||
Sbjct 680 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCCATACCAAGATTA 739
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| || |||||||| || || || || | || | | | | | | ||||
Sbjct 740 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 799
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
|| || || || |||||||| |||||||||||||| || | || | || | ||||
Sbjct 800 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTAAAC 859
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||||||||| |||||||| ||||| || ||||| || | | ||| ||||| || ||
Sbjct 860 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 919
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
|| |||||||||||||| | || |||||||| || ||||| || |||||||| || ||
Sbjct 920 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 979
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
|||||||||||||| || ||||||| | || || | | ||| || || || |
Sbjct 980 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 1039
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| | ||| ||||||||| ||| | || || |||||
Sbjct 1040 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1099
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| || |||||||| || ||||||||||| ||||| ||
Sbjct 1100 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 1159
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| |||| ||||||| || || || || || | |||||| | |||||||| || ||
Sbjct 1160 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 1219
Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070
|||| ||||| | | ||| |||||||| ||||| || |||||||| || || ||||||
Sbjct 1220 CCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1279
Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130
||||| || | ||| || || || | |||||||||||||| || ||||| ||| |
Sbjct 1280 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1339
Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190
|| |||| | |||||| | || | | | | ||||| || ||||| | ||||
Sbjct 1340 GCTACACCAAGTAAGAAGTGTAGAACAATTAACTCATAAGGACCACCATTGTATAACCAT 1399
Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250
||||||| | ||| |||||||| |||||||| ||||| | || || || | |
Sbjct 1400 TCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCCGCAGAAGTA 1459
Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310
|||| | ||| || || || || ||||| ||||| | || || |||| || |||||
Sbjct 1460 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1519
Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370
|| || ||||| || || || || || || ||| || ||||||||||| || ||
Sbjct 1520 CGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 1579
Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429
|||| ||| ||| | || ||||| | || || |||||||| | ||||||||||| |
Sbjct 1580 GCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1638
Query 22430 AGTAGAGGTGACCCAGGAACAAAA 22453
||| ||| | |||| ||| ||
Sbjct 1639 AGTGCTGGTTATCCAGTTACAGAA 1662
>seq332406
Length=435
Score = 136 bits (150), Expect = 1e-27
Identities = 197/275 (72%), Gaps = 6/275 (2%)
Strand=Plus/Minus
Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533
||||| | ||||||| || || || ||||| ||||| || | | ||||| || |||
Sbjct 272 AGGTCTACAGGGAAGTCATGAGCATTACGCTCGTGCATAACTTTCATACCAAGATTAGCA 213
Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGG 21593
||||||| || |||||||| || || || || | | | | | | | | | ||||
Sbjct 212 CGGTTAATGATATCAGCCCAAGTATTAATTACACGAGCTTGACTATCAACTACAAATTGA 153
Query 21594 TTAAAGTTGAAACCATTCAAGTTGAAAGCCATGG---TAGACACGCCAAGCGCAGCAAAC 21650
|| || || ||||||| |||||||||||||| | || | || ||||| | ||||
Sbjct 152 TTGAAATTAAAACCATCTAAGTTGAAAGCCATAGCGCTA-ATACCTAAAGCG--GTAAAC 96
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
|||||||||| | |||||| ||||| || ||||| || | | | | ||||| || ||
Sbjct 95 AAAATACCTACTATAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAATGAGAATTGTTGAAA 36
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCC 21745
|| |||||||||||||| | || |||||||| ||
Sbjct 35 CTTGCATATTGGAAGATCAATCGGCCAAAATAACC 1
>seq333312
Length=291
Score = 113 bits (124), Expect = 1e-20
Identities = 198/285 (69%), Gaps = 5/285 (2%)
Strand=Plus/Plus
Query 21918 TGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATC 21977
|||||||| || ||||||||||| ||||| || | |||| ||||||| || || || ||
Sbjct 1 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATT 60
Query 21978 CCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCA 22037
|| | |||||| | |||||||| || || | || ||||| | | ||| ||||||
Sbjct 61 CCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACTAATTGGATAGATCAAGAAAACAGCA 120
Query 22038 GTCGCAGCGGCGACAGGAGCAGAGTACGCA-ACAAAGATCCAGGGC---CTCAT-CCCTA 22092
|| ||| | || |||||||| || ||| || || || | || | ||||| || |
Sbjct 121 GTAGCAACTGCAACAGGAGCTGAATACCCAGACGAAAACTAAGTTCCCACTCATGACCCA 180
Query 22093 GTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGA 22152
| | | |||||||||||||| | ||||| ||| | || |||| | |||||| |
Sbjct 181 GACAGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTA 240
Query 22153 ATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197
| | | | | ||||| || ||||| | |||||||||||
Sbjct 241 GAGCAATTAACTCATAAGGACCACCATTGTATAACCATTCATCAA 285
>seq295831
Length=1525
Score = 102 bits (112), Expect = 2e-17
Identities = 187/267 (70%), Gaps = 8/267 (3%)
Strand=Plus/Minus
Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229
||||| || ||||| | ||||||||||| | ||| |||||||| |||||||| |||||
Sbjct 1509 GGACCTCCATTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAGTGC 1450
Query 22230 AGTCCGATGGCATT--ACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACA 22287
| || || ||| | | |||| | ||| || || || || ||||| ||||| |
Sbjct 1449 AAACCTAT--AATTGCAAAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAA 1392
Query 22288 ACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAA 22347
||||| ||| || ||||| || | ||||| || || | || || || ||| |
Sbjct 1391 GTAGGGATCCAAAAACAGGTTCACGAACACCATCAATATCTATCGGAGGGGCAGCAATGA 1332
Query 22348 AGGCGATAATAAA-ACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAA 22405
| ||||||||||| |||| || |||| ||| ||| | || ||||| | || | ||
Sbjct 1331 AAGCGATAATAAATACAA-AAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACAACAAA 1274
Query 22406 CCATCCTACATAAAGACGGTTATTAGT 22432
|||||| | |||||| |||| | |||
Sbjct 1273 CCATCCAATGTAAAGATGGTTTTCAGT 1247
>seq371407
Length=281
Score = 98.7 bits (108), Expect = 3e-16
Identities = 134/186 (72%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 22043 AGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCT 22102
||| || |||||||| || || |||||| ||||| || | ||| ||||| ||| | ||
Sbjct 1 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCTAGACGAAAACT 60
Query 22103 AAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAG 22162
|||||||||||| || ||||| ||| | || |||| | |||||| | || | |
Sbjct 61 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAA 120
Query 22163 TTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTA 22222
| ||||| || ||||| | ||||||||||| | | | |||||||| ||||||||
Sbjct 121 CACATAAGGACCACCATTGTATAACCATTCATCAACAG-AACCGCTTCCCAGATTGGGTA 179
Query 22223 GAAGTG 22228
|| ||
Sbjct 180 AAAATG 185
>seq137405
Length=2057
Score = 95.1 bits (104), Expect = 4e-15
Identities = 195/286 (68%), Gaps = 7/286 (2%)
Strand=Plus/Minus
Query 21501 CGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTG 21560
||||||||||| || | | | ||| |||||| |||||| || |||||||| || ||
Sbjct 1109 CGCTCATGCATAACTTTCATACGAAGATTGGCATGGTTAATGATATCAGCCCAAGTATTA 1050
Query 21561 ATCACCTGTCC---ATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTG 21617
|| || || | || |||||| || || | || || || ||| | || |||||
Sbjct 1049 ATTACACAACCTTGACCATCAGCTA-CAAAG--TAATTGAAATTAAAATCCTTTAAGTTA 993
Query 21618 AAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCA 21677
|||||| | || | | | || | ||||| | |||||| ||| |||| ||| |
Sbjct 992 AAAGCCGTAGTGCTAATATCTAAGGCGGTAAACCCAGTACCTATTACAAGCCAAGCAACT 933
Query 21678 AGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCA 21737
||||||| || | | ||| ||||| || || | || ||||||||| | || |||
Sbjct 932 GGAAAGAAGTGTAAAGAACGAGAATTGTTGAAATTTTTATGTTGGAAGATCAATCGGCCA 873
Query 21738 AAATAGCCGTGAGCAGCAACAATATTGTAAG-TCTCTTCCTCTTGA 21782
||||| || | ||| || |||| ||| || | | | ||||| ||||
Sbjct 872 AAATAACCATAAGCGGCTACAACATTATAGGTTTTTTTCCTTTTGA 827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145520413474500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |