Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq185790 107 2e-18 seq237122 105 8e-18 seq265020 100 3e-16 seq227082 95.1 1e-14 seq232842 89.7 6e-13 >seq185790 Length=5091 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||| | || ||||||||| |||| |||||||||| | ||||| | | | Sbjct 1959 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACCCTTGAGAGGTCATATCTCTTGAAG 2018 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | |||| | | | || | || ||| ||||||| ||| |||| || | || || Sbjct 2019 GTAC-ATGGGAAGGTTGTTGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAAT 2077 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| | | |||||||||||| | ||||||| ||| |||||| || || ||| Sbjct 2078 TCACAAGAATGACATTGATTCTACTATCAAGACATATCACATGATGTCTCAGCGTTGGTT 2137 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGT 75359 || |||||| | || ||||| |||||| | || |||||||| || ||| ||| Sbjct 2138 CACTCACGCCTCTCCCACCCTTTTCAATTCAGGAACACCAAGGCCTCAGGTGT 2190 >seq237122 Length=485 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||||||||| || | || || || || || || || |||||||||||||| Sbjct 13 TCCTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 72 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| |||| ||| | ||||| || || |||||||| || || |||||| || Sbjct 73 TTCTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAAC 132 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || ||||| || ||||| ||| || ||||| Sbjct 133 GAGCTGATCTCACGAGACGAAGGTCTGCACTGCGACTTTGC 173 >seq265020 Length=820 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||||||||| || | || || || || || || || |||||||||||||| Sbjct 13 TCCTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 72 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| |||| ||| | ||||| || || |||||||| || || |||||| || Sbjct 73 TTCTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAAC 132 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || ||||| || || || ||| Sbjct 133 GAGCTGATCTCGCGAGACGAAGGCCTGCAC 162 >seq227082 Length=6038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | ||||| ||| | ||||| ||| | || || ||| Sbjct 5930 CCCGGTACTGGAAAGACTCTTTTGGCCCGGGCCGTGGCGGGAGAAGCCGGAGTGCCGTTC 5871 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| | || | | || ||||| ||||||| || || || || ||||| Sbjct 5870 TTCTCGTGCGCGGCTTCGGAGTTCGTGGAATTGTTTGTCGGAGTTGGGGCGTCGAGGGTG 5811 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||| | || || | || | ||| | || || ||||| |||||||||||||| Sbjct 5810 CGGGATTTGTTCGAGAAGGCGAAGTCGAAAGCG-CCGTGCATTGTGTTCATTGATGAGAT 5752 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| ||||| | ||| | | ||||| | | | | | || || ||||||||| Sbjct 5751 TGATGCCGTGGGGAGGCAGAGAGGGGCTGGGCTTGGAGG--TGGGAACGATGAGAGAGAA 5694 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || || || || | || ||||||||||| ||| Sbjct 5693 CAGACCATCAACCAGCTCTTGACGGAGATGGATGGGTTT 5655 >seq232842 Length=5145 Score = 89.7 bits (98), Expect = 6e-13 Identities = 208/314 (66%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || ||| ||| || || || ||| | ||| ||||| Sbjct 224 CCTGGAACTGGAAAGACTCTTCTAGCCAAAGCTATTGCTGGGGAAGCCGGTGTTCCATTT 283 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || ||||||||||| || ||||| | || Sbjct 284 TTCTCTATCTCAGGTTCTGAGTTTGTCGAAATGTTTGTTGGAGTTGGTGCTTCCCGTGTA 343 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || ||| || || ||| || || ||||| || ||||||| ||| Sbjct 344 CGTGATCTTTTCAAAAAGGCTAAGGAGAATGCGCCTTGCATTGTGTTTGTTGATGAAATT 403 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || |||| | | ||||| | | || ||| || || |||||||| Sbjct 404 GATGCTGTTGGACGGCAAAGAGGTACTGGTATTGGGGGAGGAAACGATGAAAGAGAACAG 463 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || |||| || || | || || ||||| || ||||| | | ||||| || | || Sbjct 464 ACCCTTAACCAGCTTTTAACAGAAATGGACGGTTTTGAAGGTAACACTGGTATCATCGTA 523 Query 175615 ATTGCGGCCACTAA 175628 ||||| || ||||| Sbjct 524 ATTGCCGCGACTAA 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593616394052000