Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3 522 3e-143 seq181776 118 1e-21 seq295831 116 5e-21 seq137405 113 6e-20 seq333312 109 7e-19 seq332406 100 3e-16 seq1619 84.2 3e-11 >seq3 Length=31233 Score = 522 bits (578), Expect = 3e-143 Identities = 700/974 (72%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | || ||||||||||||||||| | || Sbjct 680 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCCATACCAAGATTA 739 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 740 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 799 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 || || || ||||| || || | ||| || ||||| |||| |||||| | || || ||| Sbjct 800 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTAAAC 859 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| || ||| || || | | ||| ||||||||||| | | | | ||||| || Sbjct 860 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 919 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 |||||| |||||||| |||| ||||| || |||||||| || |||||||||||||| Sbjct 920 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 979 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| |||||||| || | ||||| | || || || | ||| || || || ||| Sbjct 980 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 1039 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || ||||| |||||||||||||| || || || ||||| | | Sbjct 1040 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1099 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || || |||||||| ||||| ||||| ||||||||||| Sbjct 1100 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 1159 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||||||||| || |||||||| || ||||||||||| || ||||| || || ||| Sbjct 1160 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 1219 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| |||||| | ||||| || || |||||| | || ||||| |||||| ||| Sbjct 1220 CCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1279 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| | Sbjct 1280 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1339 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || |||| ||| ||||| || || || ||||| Sbjct 1340 GCTACACCAAGTAAGAAGTGTAGAACAATTAACTCATAAGGACCACCATTGTATAACCAT 1399 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | || |||||||| || || || ||||| || || ||||| |||| Sbjct 1400 TCATCAACAGAAGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCCGCAGAAGTA 1459 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 |||| | |||||||| || || ||||||||||| | | || || | |||||||||| Sbjct 1460 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1519 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 |||||||| || ||||| || || || |||||||| || || | ||||| || || Sbjct 1520 CGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 1579 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 1580 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1639 Query 8851 GTACTTGTAACCCA 8864 || || || | ||| Sbjct 1640 GTGCTGGTTATCCA 1653 >seq181776 Length=4072 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 8161 TATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAG 8220 || |||||||| | |||||||||||||| ||||| |||||||| || | |||| | Sbjct 3886 TAACCATGAGCGGTTACAATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACTTTCA 3945 Query 8221 TTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGC 8280 || ||| || | ||| || || || ||||| | | ||| || || || ||||| ||| Sbjct 3946 TTAACAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC 4005 Query 8281 ATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGC 8340 ||||||||||| || || | ||||| | ||| ||||| ||| ||| || || || ||| Sbjct 4006 ATAGCACTGAATAGGGAGCTGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGC 4065 Query 8341 ATAAG 8345 ||||| Sbjct 4066 ATAAG 4070 >seq295831 Length=1525 Score = 116 bits (128), Expect = 5e-21 Identities = 184/262 (70%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 8581 AACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGA 8640 |||| ||| |||||||| || || ||||| ||||| | | || |||||||| || || Sbjct 1518 AACTCATAAGGACCTCCATTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGG 1459 Query 8641 TAGAAGTGTAATCCAATAGCGTTGGAAGAT--GGAACGACAGCACCAGAGATGATGTTGT 8698 || ||||| || || ||| ||| || | |||| | |||||||| || || |||| Sbjct 1458 TAAAAGTGCAAACCTATAA--TTGCAAAAGTAGGAATAATGGCACCAGAAATAATATTGT 1401 Query 8699 TTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAG 8758 ||||||| | | || || |||||||||||||| ||| || ||||| | || || | Sbjct 1400 TTCCATAAAGTAGGGATCCAAAAACAGGTTCACGAACACCATCAATATCTATCGGAGGGG 1341 Query 8759 CAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAA 8818 ||||||| || || | ||||| | || || | || ||| ||| ||||| | || Sbjct 1340 CAGCAATGAAAGCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATCATCAAAA 1281 Query 8819 CTCCAAACCAACCGACATAAAG 8840 | ||||||| || | ||||| Sbjct 1280 CAACAAACCATCCAATGTAAAG 1259 >seq137405 Length=2057 Score = 113 bits (124), Expect = 6e-20 Identities = 347/530 (65%), Gaps = 14/530 (3%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTG--CATTTCTT-------TCATGCATAACTTCCATA 7941 ||||||||||| |||||||| || |||| || ||||||||||||| |||| Sbjct 1148 GCTAAGTCTAAGGGGAAGTTATGATACCATTACTCCCGTCGCTCATGCATAACTTTCATA 1089 Query 7942 CCTAAGTTTGCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATC 8000 | ||| ||| || ||||| | ||| |||| ||| ||| | ||| | | |||| Sbjct 1088 -CGAAGATTGGCATGGTTAATGATATCAGCCCAAGTATTAATTACACAACCTTGACCATC 1030 Query 8001 AACAACTGATTGGTT-AAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 | | || | | || ||| | |||||| |||| |||||| ||| | |||| |||| | | Sbjct 1029 AGCTACAAAGTAATTGAAATTAAAATCCTTTAA-GTTAAAAGCCGTAGTGCTAATATCTA 971 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 | || |||| | || || || | | | | | | |||||||| | | | | Sbjct 970 AGGCGGTAAACCCAGTACCTATTACAAGCCAAGCAACTGGAAAGAAGTGTAAAGAACGAG 911 Query 8120 TGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 ||||| || | || |||||||| |||| ||||| || |||| ||| || |||| Sbjct 910 AATTGTTGAAATTTTTATGTTGGAAGATCAATCGGCCAAAATAACCATAAGCGGCTACAA 851 Query 8180 TATTATAGG-TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 |||||||| | | ||| | |||| | || ||| ||| | || || | | || Sbjct 850 CATTATAGGTTTTTTTCCTTTTGATCGAATATATGACCTTTATTAACGGATTTATTTTTT 791 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 || || | |||| | | ||| | | | |||| || ||||||||||| || || Sbjct 790 GTGGTTGCCTTGATCAAACTAGAGATTATCGAGAAACCATGTATAGCACTGAATAGGGAG 731 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||| | || ||||| ||| ||| | || | |||||||| ||||| ||| Sbjct 730 CCGTTGAATACACTAGCTACACCTAACATGCGAAATAGGTGCATAAGGATGTTGTGCATA 671 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCAT 8408 |||| |||| | ||| ||||| || |||| | || |||| |||||| Sbjct 670 GCTTATAATATAATCATAAAGTTCAAAGTACAGCAGATTCCTAAAGGCAT 621 >seq333312 Length=291 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 8338 TGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATA 8397 |||||||| ||||| ||||| ||||||||||| | ||||||||| || |||||||| || Sbjct 1 TGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATT 60 Query 8398 CCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCG 8457 ||||||||||| || ||||| || || |||| || |||||| | ||||| || || Sbjct 61 CCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACTAATTGGATAGATCAAGAAAACAGCA 120 Query 8458 AAAGCAGCAGATACTGGAGC 8477 |||| | | || ||||| Sbjct 121 GTAGCAACTGCAACAGGAGC 140 >seq332406 Length=435 Score = 100 bits (110), Expect = 3e-16 Identities = 189/276 (68%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 7892 CTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTG 7951 ||| ||||| ||||||| || ||||| | || |||||||||| |||||| | || | Sbjct 274 CTAGGTCTACAGGGAAGTCATGAGCATTACGCTCGTGCATAACTTTCATACCAAGATTAG 215 Query 7952 CTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATT 8011 | | ||| | | ||| |||| ||| ||| | | | | | |||||| || ||| Sbjct 214 CACGGTTAATGATATCAGCCCAAGTATTAATTACACGAGCTTGACTATCAACTACAAATT 155 Query 8012 GGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACC 8071 | || || ||||| || | | ||| || ||||| | || |||||| | || || ||| Sbjct 154 GATTGAAATTAAAACCATCTAAGTTGAAAGCCATAGCGCTAATACCTAAAGCGGTAAACA 95 Query 8072 AAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACTGTTGTTAAA 8129 ||| || ||| | || | | ||| ||||||||||| |||| | | ||||| || Sbjct 94 AAATACCTACTATAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAAT--GAGAATTGTTGAA 37 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCC 8165 |||||| |||||||| |||| ||||| || || Sbjct 36 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACC 1 >seq1619 Length=8420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/286 (67%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 8557 CCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCT 8616 |||| | |||||| | | || |||| || ||||| || || || | ||| ||||| Sbjct 3076 CCAAGTAAGAAGTGTAGAACAATTAACTCATTAGGACCACCATTGTATAGCCATTCATCA 3017 Query 8617 AATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTG--GAAGATGGAA 8674 | | || ||| || || | || ||||| || || |||| ||| |||| |||| Sbjct 3016 ACAGAAGCCACTTTTCAGATTGAGTAAAAGTGCAAACCTATAG--TTGCAGAAGTAGGAA 2959 Query 8675 CGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAA 8734 | | |||| | || || ||||||| ||| | | || || |||| ||||||||| Sbjct 2958 TAATAAAACCAAAAATAATATTGTTTCTATAAAGTAGAGATCCAAAAACAAGTTCACGAA 2899 Query 8735 TACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAG 8794 |||| || ||||| || | || ||||||||||| || | ||||| | || | || Sbjct 2898 TACCATCAATATCTACTAGAGG-GCAGCAATAAAAGCGATAATAAATACAAAAGTTGGAG 2840 Query 8795 CTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 | | ||| ||| ||||| | ||| |||||||| || | ||||| Sbjct 2839 -TCATAAGGTAGGGATCATCACAACACCAAACCATCCAATGTAAAG 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612813688663000