Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3 500 3e-137 seq332406 136 1e-27 seq333312 113 1e-20 seq295831 102 2e-17 seq371407 98.7 3e-16 seq137405 95.1 4e-15 >seq3 Length=31233 Score = 500 bits (554), Expect = 3e-137 Identities = 703/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 1662 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1603 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || || ||||||||||| || ||| || || Sbjct 1602 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCC 1544 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | ||||| ||||| Sbjct 1543 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1484 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || ||| | |||| | | || || || | ||||| |||||||| Sbjct 1483 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTACCCAAT 1424 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||| ||| | ||||||||||| | ||||| || ||||| | | | | || Sbjct 1423 CTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGT 1364 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | |||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 1363 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1304 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 1303 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1244 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | ||||| |||| || || |||||||| | |||||| | || || Sbjct 1243 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 1184 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| |||| | || ||||| ||||||||||| || |||||||| || Sbjct 1183 CTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 1124 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||| | ||||| || || ||||| || || | ||| ||||||||| || Sbjct 1123 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1064 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || || | || Sbjct 1063 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGG 1004 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||||||||| || || |||||||| || ||||| || |||||||| Sbjct 1003 TTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGG 944 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | |||||||||||||| || || || ||||| ||| | | || ||||| || || Sbjct 943 CCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGC 884 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 ||| |||||||| ||||||||||||||| | || | || | || ||||||||||| Sbjct 883 TGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAA 824 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 ||| |||||||| || || || |||||| | | | | | | || | || || || || Sbjct 823 CTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 764 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| || |||||||||| || ||||| | || || ||||| ||||| || || Sbjct 763 TTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCACGAGCGTAATGC 704 Query 42193 ACACAACTTCCCGCTTGACCTTGC 42216 || |||||||| || ||||| || Sbjct 703 TCATAACTTCCCTCTAGACCTAGC 680 >seq332406 Length=435 Score = 136 bits (150), Expect = 1e-27 Identities = 197/275 (72%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 41942 GGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCAT 42001 || |||||||| || | |||||||||||||| || || || ||||| | | | | || Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAC 60 Query 42002 TTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTA-- 42059 ||||| || ||||| |||||| | |||||||||| |||| | ||||| || | || Sbjct 61 TTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTAC--CGCTTTAGGTAT-TAGC 117 Query 42060 -CCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 | |||||||||||||| ||||||| || || || |||| | | | | | | | | Sbjct 118 GCTATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCT 177 Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178 | || || || || |||||||| || |||||||||| || ||||| | | || ||| Sbjct 178 CGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTATG 237 Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213 || ||||| || || || ||||||| | ||||| Sbjct 238 CACGAGCGTAATGCTCATGACTTCCCTGTAGACCT 272 >seq333312 Length=291 Score = 113 bits (124), Expect = 1e-20 Identities = 198/285 (69%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTG 41549 ||||||||||| | ||||| || ||||| | | | | | | |||||| | ||| Sbjct 285 TTGATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGCTCTACACTTCTTACTTG 226 Query 41550 GCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGG-ATGAG---G 41605 | || | ||| ||||| | |||||||||||||| | | || || ||||| | Sbjct 225 GTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCTGTCTGGGTCATGAGTGGG 166 Query 41606 CCCTGGATCTTTGT-TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGT 41664 || | || || || ||| || |||||||| || | ||| |||||||| ||| | | Sbjct 165 AACTTAGTTTTCGTCTGGGTATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGAT 106 Query 41665 TTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTT 41724 ||||| || | || || |||||||| | |||||| | || || || || || || Sbjct 105 CTATCCAATTAGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTT 46 Query 41725 CAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCA 41769 ||||| |||| | || ||||| ||||||||||| || |||||||| Sbjct 45 CAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1 >seq295831 Length=1525 Score = 102 bits (112), Expect = 2e-17 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | |||| |||||| | |||||||| | || | ||||| || | ||| ||| | Sbjct 1247 ACTGAAAACCATCTTTACATTGGATGGTTTGTTGTTTTGATGATCCC-TACCTTATTGAC 1305 Query 41314 CGCTACAACTTGT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372 ||| || |||| ||||||||||| || ||| || || || | || || ||||| Sbjct 1306 CGCAACTT-TTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGATAGATATTGATGGTG 1364 Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432 | || ||||| || ||| ||||| | ||||| ||||| || || || || ||| | Sbjct 1365 TTCGTGAACCTGTTTTTGGATCCCTACTTTATGGAAACAATATTATTTCTGGTGCCATTA 1424 Query 41433 TTCCGAGCAGT--AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACT 41490 |||| | | ||| || || | ||||| |||||||| |||||||| ||| | | Sbjct 1425 TTCCTACTTTTGCAATT--ATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCTTCTGT 1482 Query 41491 TGATGAATGGCTGTACAACGGCGGTCC 41517 |||||||||| | ||||| || ||||| Sbjct 1483 TGATGAATGGTTATACAATGGAGGTCC 1509 >seq371407 Length=281 Score = 98.7 bits (108), Expect = 3e-16 Identities = 134/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 || || |||||||| |||||||| | | | ||||||||||| | ||||| || ||||| Sbjct 185 CATTTTTACCCAATCTGGGAAGCGGTT-CTGTTGATGAATGGTTATACAATGGTGGTCCT 127 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | | | || | |||||| | |||| || | ||| ||||| || |||||| Sbjct 126 TATGTGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 67 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 |||||||| | ||| ||||| ||| | || ||||| |||||| || || |||||||| Sbjct 66 GAACTTAGTTTTCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 7 Query 41639 GCCGCT 41644 || ||| Sbjct 6 GCAGCT 1 >seq137405 Length=2057 Score = 95.1 bits (104), Expect = 4e-15 Identities = 195/286 (68%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 41905 TCAAGAGGAAGAGA-CTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCT 41963 |||| ||||| | | | || ||| |||| || ||| | || |||||||| || | |||| Sbjct 827 TCAAAAGGAAAAAAACCTATAATGTTGTAGCCGCTTATGGTTATTTTGGCCGATTGATCT 886 Query 41964 TCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTG 42023 ||||| || | || || ||||| ||| | | || ||||||| | ||| |||| || Sbjct 887 TCCAACATAAAAATTTCAACAATTCTCGTTCTTTACACTTCTTTCCAGTTGCTTGGCTTG 946 Query 42024 TTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTT 42083 | |||||| | ||||| | || | | | || | |||||| ||||| || | || Sbjct 947 TAATAGGTACTGGGTTTACCGCCTTAGATATTAGCACTACGGCTTTTAACTTAAAGGATT 1006 Query 42084 TCAACTTTAACCAATCTCTGCTAGCTGCTGAT---GGACAGGTGATCAACACCTGGGCTG 42140 | || || || | || || |||||| || | || || || || || ||||||| Sbjct 1007 TTAATTTCAATTA--CTTTG-TAGCTGATGGTCAAGGTTGTGTAATTAATACTTGGGCTG 1063 Query 42141 ACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCG 42186 | || |||||| |||||| ||| | | | || ||||||||||| Sbjct 1064 ATATCATTAACCATGCCAATCTTCGTATGAAAGTTATGCATGAGCG 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145526783376600