Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq148231 100 5e-16 seq33053 95.1 2e-14 seq248859 86.0 1e-11 seq230935 86.0 1e-11 >seq148231 Length=1271 Score = 100 bits (110), Expect = 5e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | |||||||||||||| | || | ||| || || || |||||| Sbjct 238 ATACCACCGCGAAGACGAAGTACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCG 179 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| || || | ||||||||||| || || | | || || |||||| Sbjct 178 GCTAGGGTTCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGGCGTTGCTGGTCAGGA 119 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || |||| || | || || || ||||| ||| Sbjct 118 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCG 59 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| || || || ||||| ||||| || || || ||||| || Sbjct 58 ACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATGTT 6 >seq33053 Length=1800 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| || |||| || || | ||||||||||| || || | | | Sbjct 1521 ATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGC 1462 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| |||||||| || || || || |||| || | ||| || || Sbjct 1461 TGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTG 1402 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| ||||| || ||||| ||||| || || || ||||| ||||| || || || ||| Sbjct 1401 TCGGAGGACTCGACCTCTAGGGTTATGGTCTTGCCCGTTAGGGTTTTCACGAAGATCTGC 1342 Query 193359 AT 193360 || Sbjct 1341 AT 1340 >seq248859 Length=290 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| || ||||| || || || || || ||||| || || || || Sbjct 200 TGCTTGCCGGCAAAAATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGAATC 141 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||| ||||| ||| ||||| || | || || || || || Sbjct 140 TTGGCTTTAACATTATCAATGGTATCAGAACTTTCAACCTCCAACGTGATGGTCTTCCCA 81 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||| ||||||||| Sbjct 80 GTGAGGGTCTTAACAAAGATTTGCATT 54 >seq230935 Length=680 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | ||||| || || || || || ||||| || || || || Sbjct 481 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATC 540 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||| || |||||| ||||| || | ||| || || || || Sbjct 541 TTGGCTTTGACATTATCAATGGTGTCGGAACTTTCAACCTCCAAAGTGATGGTCTTCCCA 600 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||| ||||||||| Sbjct 601 GTGAGGGTCTTAACAAAGATTTGCATT 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895200829578000