Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq230935 87.8 3e-12 seq154533 86.0 9e-12 >seq230935 Length=680 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| || || || || || || || ||| ||| Sbjct 627 AATGCAAATCTTTGTTAAGACCCTCACTGGGAAGACCATCACTTTGGAGGTTGAAAGTTC 568 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || ||| || || || || || ||||| || || ||||| || Sbjct 567 CGACACCATTGATAATGTCAAAGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCA 508 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | |||||| ||||||||||| || |||||| | | ||||| || Sbjct 507 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTTGCCGATTACAA 448 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || ||||| || ||| Sbjct 447 CATCCAGAAAGAATCAACCCTTCACTTGGTG 417 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || || ||||| || || Sbjct 170 ATGCAGATTTTTGTGAAGACCTTGACTGGAAAGACCATCACTTTGGAAGTTGAGAGCTCG 111 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| ||||| || || || || ||||| || ||||| || Sbjct 110 GATACCATCGACAATGTGAAGGCCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 51 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || ||||| | ||| |||||||||||||| || Sbjct 50 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGA 16 >seq154533 Length=826 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || || || || ||||| || Sbjct 187 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACGATCACCTTGGAGGTCGAGAGCTCA 246 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || || || || ||||| |||||||| || Sbjct 247 GACACCATTGACAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 306 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| |||||||||||||| ||| || ||| | | ||||| ||| Sbjct 307 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGGAGGACTCTGGCGGATTACAAT 366 Query 156003 AT 156004 || Sbjct 367 AT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728249004890000