Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq208788 104 4e-17 seq107409 86.0 1e-11 >seq208788 Length=2051 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||||| || | || || ||| ||||| || Sbjct 788 ATACCACCACGGAGACGGAGAACCAAATGTAGGGTCGATTCCTTTTGAATGTTATAGTCA 729 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| || | || || || ||||| |||| ||||| ||||| ||| Sbjct 728 GCAAGAGTACGGCCGTCCTCAAGCTGCTTTCCCGCAAAGATTAGCCTCTGCTGGTCTGGT 669 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| |||| ||||| || || ||||| ||| Sbjct 668 GGGATGCCTTCCTTCTCCTGGATCTTAGTTTTGACATTGTCAATTGTGTCTGAGCTTTCG 609 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || || || ||||| || | || |||||||| Sbjct 608 ACCTCAAGAGTAATGGTCTTTCCCGTCAATGTCTTCACAAAAATCTGCAT 559 >seq107409 Length=3443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || |||||||| || | || || || ||||| || Sbjct 2191 ATGCCACCACGAAGACGGAGAACCAAATGTAAGGTCGATTCCTTTTGGATGTTATAGTCA 2250 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || || ||||||||||| | ||||| ||||| ||| Sbjct 2251 GCGAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAGCCTCTGCTGGTCTGGT 2310 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| ||||| || || ||||| ||| Sbjct 2311 GGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTTTCA 2370 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || || || || || | || |||||||| Sbjct 2371 ACCTCAAGGGTAATAGTCTTTCCCGTCAAGGTCTTCACAAAAATCTGCAT 2420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900655293945000