Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq172718 100 7e-16 seq157704 96.9 8e-15 seq136752 96.9 8e-15 >seq172718 Length=1671 Score = 100 bits (110), Expect = 7e-16 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||||| || ||||| ||| |||||||| | ||||| || |||||||||||| Sbjct 559 CATTTGAACGATGGTGATTTTGTTTTGTTCAATCGTCAACCTAGTCTCCATAAAATGTCT 500 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTAAGTG 305426 || |||| |||| |||| ||||| | | ||| | |||| | | ||| || || Sbjct 499 ATTATGGGGCATAGGATCAAG--ATTATGCCGTATTCAACTTTCCGGCTGAATTTATCTG 442 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 ||| || || ||||| ||||||||||| ||||||||||||||||| || ||||| | Sbjct 441 TCACTACACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCACGTTCCTCAGT 382 Query 305487 C 305487 | Sbjct 381 C 381 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 305010 GAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATT 305069 |||| || || ||||| |||||||| |||||| |||| | | || ||||| |||||| Sbjct 1040 GAGGGAACCTGATGGGGAAACGTGTGGATTTTTCTGCACGTACGGTTATCACCCCTGATC 981 Query 305070 CTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA-ATTGCTTTAAAACTAACATTT 305128 | |||| || ||||||||||||| ||| | || ||||||||||| || |||| | Sbjct 980 CAACCATTAACATTGATGAATTAGGAGTGCCA-TGGAGTATTGCTTTAAATCTTACATAT 922 Query 305129 CCAGAGA 305135 ||||||| Sbjct 921 CCAGAGA 915 >seq157704 Length=4603 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 304989 AAGGTAAAG-AGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 |||| |||| | ||||| ||| |||| || | ||||| |||||||| || ||| |||| Sbjct 3882 AAGGCAAAGGAAGGTCGAATTAGAGGGAACTTGATGGGGAAACGTGTGGACTTTTCTGCA 3823 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA 305107 | | || ||||| |||||| | |||| | || ||||||||||||| ||| | || Sbjct 3822 CGTACAGTTATCACCCCTGATCCAACCATTAATATTGATGAATTAGGAGTGCCA-TGGAG 3764 Query 305108 -ATTGCTTTAAAACTAACATTTCCAGAGA 305135 ||||||||||| || |||| |||||||| Sbjct 3763 TATTGCTTTAAATCTCACATATCCAGAGA 3735 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| ||| ||||| || | |||||| | ||||| || |||||||||||| Sbjct 3384 CATTTGATTGATGGTGATTTTATTTTATTCAATCGTCAACCTAGTCTCCATAAAATGTCT 3325 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTAAGTG 305426 || |||| |||| |||| ||||| | | ||| | |||| | | ||| || || Sbjct 3324 ATTATGGGGCATAGGATCAAG--ATTATGCCGTATTCAACTTTCCGGCTGAATTTATCTG 3267 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 ||| || || ||||| ||||||||||| ||||||||||| ||||| || ||||| | Sbjct 3266 TCACTACACCATACAATGCTGATTTTGATGGTGATGAAATGAACATGCACGTTCCTCAGT 3207 Query 305487 C 305487 | Sbjct 3206 C 3206 >seq136752 Length=4609 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 304989 AAGGTAAAG-AGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 |||| |||| | ||||| ||| |||| || | ||||| |||||||| || ||| |||| Sbjct 3888 AAGGCAAAGGAAGGTCGAATTAGAGGGAACTTGATGGGGAAACGTGTGGACTTTTCTGCA 3829 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA 305107 | | || ||||| |||||| | |||| | || ||||||||||||| ||| | || Sbjct 3828 CGTACAGTTATCACCCCTGATCCAACCATTAATATTGATGAATTAGGAGTGCCA-TGGAG 3770 Query 305108 -ATTGCTTTAAAACTAACATTTCCAGAGA 305135 ||||||||||| || |||| |||||||| Sbjct 3769 TATTGCTTTAAATCTCACATATCCAGAGA 3741 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| ||| ||||| || | |||||| | ||||| || |||||||||||| Sbjct 3390 CATTTGATTGATGGTGATTTTATTTTATTCAATCGTCAACCTAGTCTCCATAAAATGTCT 3331 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTAAGTG 305426 || |||| |||| |||| ||||| | | ||| | |||| | | ||| || || Sbjct 3330 ATTATGGGGCATAGGATCAAG--ATTATGCCGTATTCAACTTTCCGGCTGAATTTATCTG 3273 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 ||| || || ||||| ||||||||||| ||||||||||||||||| || ||||| | Sbjct 3272 TCACTACACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCACGTTCCTCAGT 3213 Query 305487 C 305487 | Sbjct 3212 C 3212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180790828405025