Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq167436 228 1e-53 seq97145 224 1e-52 seq237122 125 1e-22 seq265020 107 3e-17 seq171845 104 3e-16 seq97558 95.1 2e-13 >seq167436 Length=640 Score = 228 bits (252), Expect = 1e-53 Identities = 300/408 (74%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTA-CCAGCGGATATGGGAAATGTACCA 1455792 |||||| ||||||| | ||||||| |||| || |||| || |||||||||||| | Sbjct 407 AACCCGGACCGCTTCTGCATGTTCCCAATCCAGTATCCAGAA-ATCTGGGAAATGTACAA 349 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTC 1455851 |||| |||||||||| || |||||||||||||| ||||| || |||| | ||| Sbjct 348 GAAAG-CCGAGGCCTCTTTCTGGACCGCCGAGGAAGTCGATCTTTCTCAGGACATCCGTC 290 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 | | | | || | | ||||||| || ||||||| || |||||||||||||| Sbjct 289 AGTTCGAAGCC-CTAACCCCCGACGAGAAGCACTTCATCACCCATGTCCTCGCCTTTTT- 232 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 ||||||| ||| |||||||| ||||||||| ||||| | || ||||| ||||| || Sbjct 231 CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGGAGGTTCATGAAGGAGGTTCA 172 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | | ||||| || || ||||| |||||||||| ||| || ||||||||||| || Sbjct 171 AGTCGCGGAGGCGCGCGCCTTCTACGGCTTCCAGATCGGCATTGAGAACATCCACTCCGA 112 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 | ||| ||||| | || | ||| |||||||| | | ||||||| || |||||| Sbjct 111 GATGTACAGCCTCCTTCTGGAGTCGTACATCAAGGACTCCGCCGAGAAGACCCGCCTCTT 52 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGC 1456139 || |||||||||||| || || | || ||| |||||| | ||||| Sbjct 51 TCACGCCATCGACACCGTCCCTTGCGTCGCGAAGAAGGCCCAGTGGGC 4 >seq97145 Length=990 Score = 224 bits (248), Expect = 1e-52 Identities = 275/373 (74%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| || |||||||||||| | Sbjct 371 AACCCAGACCGGTTCTGCATGTTCCCAATCCAGTACCCAGAAATCTGGGAAATGTACAAG 312 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||| ||||||||||||| |||||||||||||| || |||||| | || | ||| Sbjct 311 AAAG-CCGAGGCCTCCTTCTGGACCGCCGAGGAAGTGGACCTCTCCCAGGATATTCGCCA 253 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 | | | |||| | |||||||| || ||||||| |||||||||||||| || || Sbjct 252 GTTTGAAGCCCTGACCCACGACGAGAAGCACTTCATCAGCCACGTCCTCGCCTTCTT-CG 194 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| ||| || ||||| ||||||||| ||||| | || ||||| ||||| ||| Sbjct 193 CCGCCTCCGACGGAATCGTACTCGAGAACCTCGCCGGGAGGTTCATGAAGGAGGTTCAAG 134 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | ||||| || || ||||| ||||||||||||||||| ||||||||||| || | Sbjct 133 TCGCGGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGA 74 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| ||||| | || | || |||||||| | | ||||||| || |||||| | Sbjct 73 TGTACAGCCTCCTTCTGGAGTCGTATATCAAGGACTCCGCCGAGAAGACCCGCCTCTTCC 14 Query 1456094 GCGCCATCGACAC 1456106 |||||||||||| Sbjct 13 ACGCCATCGACAC 1 >seq237122 Length=485 Score = 125 bits (138), Expect = 1e-22 Identities = 233/333 (70%), Gaps = 12/333 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| ||||||| |||||||| || ||||| ||| | | || || |||| | | Sbjct 153 AGGTCTGCACTGCGACTTTGCTTGCCTGCTTTACTCCCTCCTGAGAAAGAAGCTG---AG 209 Query 1456507 CGACGTGCC---CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 ||| | || |||| |||| | ||| || || |||||||||| ||||||||| | Sbjct 210 CGAGGAGCGAGTCAAGGCGATCGTTCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTCTG 269 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623 ||| |||||||| ||| | |||| ||||||| | | | ||| |||||||||| | Sbjct 270 CGACGCGCTGCCGTGCGCGTTGGTCGGGATGAACGGTGC-GTTGATGAGCCAGTACATCG 328 Query 1456624 AATTTTGTCGCCGACCGCCTGCTCGCG-GCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 | || || ||||| || ||| | ||| ||||| || | ||| |||| || | Sbjct 329 AGTTC-GTTGCCGATCGGCTGTT-GCGAGCGCTAGGGTACGG-GAAGGTATATGGTGTTC 385 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGC 1456742 |||||||| ||||||||| |||||||| | |||| ||||||||||| |||||| Sbjct 386 AGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGACCAACTTCTTCGAGA 445 Query 1456743 GCCGCGT-GGCGAGTACGCCAAGGCCGGCGTCA 1456774 || || || |||||| |||||| ||||| Sbjct 446 AGCGGGTCGGGGAGTACCAGAAGGCCTCCGTCA 478 Score = 104 bits (114), Expect = 3e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| |||||||| || ||| ||| ||| ||||||| || ||||| ||||| || || || Sbjct 15 CTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 74 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 ||||||||| || ||||||||||| || ||||||||||| || | || ||| ||||| Sbjct 75 CTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGAC-TCACCTTCTCCAACG 133 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 | | ||| || ||||||| Sbjct 134 AGCTGATCTCACGAGACGAAG 154 >seq265020 Length=820 Score = 107 bits (118), Expect = 3e-17 Identities = 224/327 (69%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||||| || || ||||| || || ||| || | || || |||| | | ||| | Sbjct 158 TGCACTGCGATTTCGCCTGCCTTCTTTACTCGCTTCTGAGGAAGAAGCTG---AGCGAGG 214 Query 1456512 TGCC---CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 || |||| ||| || ||| || || |||||||||| |||||||| |||| Sbjct 215 AGCGAGTCAAGGCTATCGTCCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACG 274 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 |||| || ||| | |||| ||||||| | || | ||| | || ||||| || || Sbjct 275 CGCTACCATGTGCGTTGGTCGGGATGAACGGCGCCT-TGATGAGTCAATACATCGAGTTC 333 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 ||||||||||| ||| | | ||||| || | ||| |||| ||| | |||| Sbjct 334 -GTCGCCGACCGGCTGTTGGGTGCGCTAGGGTACGG-GAAGGTGTACGGTGTTCAGAACC 391 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 |||| ||||||||| |||||||| | |||| ||||||||||| |||||| | | Sbjct 392 CGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGACCAACTTCTTCGAGAAGAGGG 451 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGTCA 1456774 | || |||||| |||||| ||||| Sbjct 452 TCGGGGAGTACCAGAAGGCCTCCGTCA 478 Score = 104 bits (114), Expect = 3e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| |||||||| || ||| ||| ||| ||||||| || ||||| ||||| || || || Sbjct 15 CTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 74 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 ||||||||| || ||||||||||| || ||||||||||| || | || ||| ||||| Sbjct 75 CTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGAC-TCACCTTCTCCAACG 133 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 | | ||| || ||||||| Sbjct 134 AGCTGATCTCGCGAGACGAAG 154 >seq171845 Length=3258 Score = 104 bits (114), Expect = 3e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| |||||| || | | ||| ||| |||| |||| || Sbjct 2680 ATCTTCAAGGTCCTCAAGCAGGTTCACCCC-GA--CATCGGG--ATC-TCCAGCAAGGCC 2627 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 2626 ATGGGGATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCA 2567 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| ||||||| | || ||||||||||| |||||| Sbjct 2566 AGGCTCGCCAGGTACAACAAGAAGCCCACGATCACATCCCGGGAGATCCAGACTGCCGTG 2507 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || || | |||||||||||||||||| |||| Sbjct 2506 AGGCTTGTTCTTCCCGGTGAGCTCGCGAAGCACGCCGTCTCCGAGGGAACCA 2455 >seq97558 Length=2857 Score = 95.1 bits (104), Expect = 2e-13 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| ||||| || | | ||| ||| |||| |||| || Sbjct 2047 ATCTTCAAGGTCCTCAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 2100 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| | |||||| Sbjct 2101 ATGGGAATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCG 2160 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | ||||| | | ||||||| || ||| | | || ||||||||||| || ||| Sbjct 2161 AGGCTGGCCAGGTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACTGCGGTG 2220 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | |||||| || |||| |||||| ||||||||||| |||| Sbjct 2221 AGACTTGTTCTTCCCGGCGAGCTCGCCAAGCACGCTGTCTCCGAGGGTACCA 2272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7139613860856050