Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq185790 107 2e-18 seq237122 102 1e-16 seq265020 95.1 2e-14 seq227082 95.1 2e-14 seq232842 93.3 5e-14 >seq185790 Length=5091 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||| ||| || |||||||| || | |||||| ||||| || | |||||| ||||| || Sbjct 2190 ACACCTGAGGCCTTGGTGTTCCTGAATTGAAAAGGGTGGGAGAGGCGTGAGTGAACCAAC 2131 Query 111996 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 || |||||| ||| ||||||| | |||||||||||| | | ||| || || | Sbjct 2130 GCTGAGACATCATGTGATATGTCTTGATAGTAGAATCAATGTCATTCTTGTGAATTCCAA 2071 Query 112056 TTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA- 112114 || |||| ||| ||||||| ||| || | || | | | |||| | || | | Sbjct 2070 CAGCAACCCTCATCAACATGTGCTGAGGCCTCTCAACAACCTTCCCAT-GTACCTTCAAG 2012 Query 112115 AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 ||||| | |||||||||| |||| ||||||||| || | ||| ||||||| Sbjct 2011 AGATATGACCTCTCAAGGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 1959 >seq237122 Length=485 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| ||||| || ||||| || || || || || |||||| || || Sbjct 173 GCAAAGTCGCAGTGCAGACCTTCGTCTCGTGAGATCAGCTCGTTGGAGAAGGTGAGTCCC 114 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || || ||||| | ||| |||| |||||||| |||||||||||||| Sbjct 113 GGCATGAGGCCTCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATC 54 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || || || || || | || || ||||||||||| Sbjct 53 CCTTCGACGCAGGCGAAGGCGATCAGACGCTCGGCGAAGGA 13 >seq265020 Length=820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || || || || |||||| || || |||||||| || Sbjct 162 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATGAGGCC 103 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||| | ||| |||| |||||||| |||||||||||||| || || || || Sbjct 102 TCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 43 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | || || ||||||||||| Sbjct 42 GGCGAAGGCGATCAGACGCTCGGCGAAGGA 13 >seq227082 Length=6038 Score = 95.1 bits (104), Expect = 2e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | || || || || |||||||||||||| || | Sbjct 5655 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGTTCTCTCTCATCGTTCCCA-- 5712 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | ||| | ||||| |||||||||||||||||||| ||||| Sbjct 5713 CCTCCAAGCCCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAACACAATG 5772 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | || || | ||| || ||||| || || || || Sbjct 5773 CACGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCGCACCCTCGACGCCCCAACTCC 5831 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| ||||| || | | || | |||| || ||| || || | ||| || Sbjct 5832 GACAAACAATTCCACGAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCC 5891 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| | ||| ||||| | || |||||||| ||||| || Sbjct 5892 CGCCACGGCCCGGGCCAAAAGAGTCTTTCCAGTACCGGG 5930 >seq232842 Length=5145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 209/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || ||||| || | || ||||| | | ||||| || ||||| || || | Sbjct 537 TTAGTCGCGGCAATTACGATGATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 478 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC 11620 | || |||| || |||||||| ||||| ||| || | | ||||| || | |||| Sbjct 477 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCTCCCCCAATACCAGTACCTCTTTGC 418 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || |||||||| ||||||| || ||||| || || ||| || || || Sbjct 417 CGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTAGCCTTT 358 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || ||||| || || | ||||| || ||||||||||| || ||||| | | Sbjct 357 TTGAAAAGATCACGTACACGGGAAGCACCAACTCCAACAAACATTTCGACAAACTCAGAA 298 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 | ||| || ||||| ||| | ||| || || || ||| ||| || || ||| Sbjct 297 CCTGAGATAGAGAAAAATGGAACACCGGCTTCCCCAGCAATAGCTTTGGCTAGAAGAGTC 238 Query 11801 TTTCCCGTACCTGG 11814 ||||| || || || Sbjct 237 TTTCCAGTTCCAGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624923045340000