Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq237122 132 6e-26 seq265020 131 2e-25 seq232842 129 7e-25 seq227082 109 6e-19 seq352663 100 3e-16 seq243987 96.9 4e-15 seq17435 96.9 4e-15 >seq237122 Length=485 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| || |||| || || || || || || ||||||||||| || | Sbjct 13 TCCTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 72 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| |||| ||||||||||| ||||| |||||||| || ||| |||||||||| Sbjct 73 TTCTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAAC 132 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| || ||||| || || ||| || ||||| Sbjct 133 GAGCTGATCTCACGAGACGAAGGTCTGCACTGCGACTTTGC 173 >seq265020 Length=820 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| || |||| || || || || || || ||||||||||| || | Sbjct 13 TCCTTCGCCGAGCGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 72 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| |||| ||||||||||| ||||| |||||||| || ||| |||||||||| Sbjct 73 TTCTGCGCCATTTTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAAC 132 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || ||||| || || ||| Sbjct 133 GAGCTGATCTCGCGAGACGAAGGCCTGCAC 162 >seq232842 Length=5145 Score = 129 bits (142), Expect = 7e-25 Identities = 266/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || |||||||| || || | ||||| || | | |||||||| ||||| ||||| ||| Sbjct 537 TTAGTCGCGGCAATTACGATGATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 478 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 || ||||||| || ||||| | |||||| || || | | ||||| || | |||| Sbjct 477 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCTCCCCCAATACCAGTACCTCTTTGC 418 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 ||| || |||||||| ||||||| || || ||||| || ||| || ||| | Sbjct 417 CGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTAGCCTTT 358 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 | || ||||| |||||||| || || || ||||||||||| || ||||| | | Sbjct 357 TTGAAAAGATCACGTACACGGGAAGCACCAACTCCAACAAACATTTCGACAAACTCAGAA 298 Query 9815 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | | | || | || || || ||| | ||| || ||||| ||| ||| |||||||| Sbjct 297 CCTG-AGATAGAGAAAAATGGAACACCGGCTTCCCCAGCAATAGCTTTGGCTAGAAGAGT 239 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCC 9933 ||| || || || || ||| | || || | || ||||| || ||| | | Sbjct 238 CTTTCCAGTTCCAGGGGGACCAACAAGAAGAACTCCCTTAGGAATGCGAGCCCCAACTGC 179 Query 9934 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | | | |||||||||| ||| | || ||||| Sbjct 178 AGTGAACCTCTCAGGTTTCTTCAAGAACTCCAC 146 >seq227082 Length=6038 Score = 109 bits (120), Expect = 6e-19 Identities = 197/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || ||||| || || ||||| | ||||| ||| | Sbjct 5655 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGTTCTCTCTCATCGTTCCCA-- 5712 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | ||||| | | ||| | |||||||||||||||||||||||||| || ||| Sbjct 5713 CCTCCAAGCCCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAACACAATG 5772 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC--AC 9786 || || ||||| || || || || | |||||| ||| || | ||||| || Sbjct 5773 CACGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCCG--CACCCTCGACGCCCCAAC 5828 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||||| ||||| || | | || | || || ||| || || | ||| Sbjct 5829 TCCGACAAACAATTCCACGAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTC 5888 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| | ||| ||||| | ||||||||| || ||||| || Sbjct 5889 TCCCGCCACGGCCCGGGCCAAAAGAGTCTTTCCAGTACCGGG 5930 >seq352663 Length=3940 Score = 100 bits (110), Expect = 3e-16 Identities = 195/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| || |||||||| || || || | |||||| ||| | Sbjct 2164 AAACCCATCCATTTCCGTCAAGAGCTGGTTAATGGTCTGCTCTCTTTCATCGTTCCCA-- 2221 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | ||||| | | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 2222 CCTCCAAGCCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 2281 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC--AC 9786 || || ||||| || || || || | |||||| ||| || | ||||| || Sbjct 2282 CACGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCCG--CACTCTCGACGCCCCTAC 2337 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||||| ||||| || | | || | || || ||| || || | ||| Sbjct 2338 TCCGACAAACAATTCCACGAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTC 2397 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| | || ||||| | ||||||||| || ||||| || Sbjct 2398 TCCCGCCACCGCCCGGGCCAAAAGAGTCTTTCCAGTACCAGG 2439 >seq243987 Length=636 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || ||||| || ||||| | ||||| || | | |||||||| ||||| ||||||||| Sbjct 464 TTAGTCGCAGCAATGACGATGATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTCAAA 523 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 || ||||||| |||||||| | |||||| || || | | ||||| || | ||| Sbjct 524 AGCTGGTTAAGGGTTTGTTCTCTTTCATCGTTTCCTCCCCCAATACCAGTACCTCTTTGG 583 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 ||| || |||||||| ||||||| || || ||||| || Sbjct 584 CGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGG 624 >seq17435 Length=4377 Score = 96.9 bits (106), Expect = 4e-15 Identities = 185/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 9620 TCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA 9679 ||||||||||| ||||| ||||||| || ||||| | ||||| || || | | | Sbjct 1151 TCCATCTCTGTTAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATTGTTTCCTCCCCCAATA 1092 Query 9680 CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGA 9739 |||| || || |||| ||| || |||||||| ||||||| || || ||||| || | Sbjct 1091 CCAGTACCGCTTTGCCATCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCA 1032 Query 9740 TTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATC 9799 || || || || || ||||| |||||||| || | || ||||||||||| Sbjct 1031 TTCTCCTTGGCCTTTTTGAAAAGATCACGTACACGGGAAGCATCAACTCCAACAAACATT 972 Query 9800 TCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGC 9858 || || || | | | | | || | || || || ||| || ||| || ||||| || Sbjct 971 TCGACGAACTCAGAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCCCCAGCAATTGC 913 Query 9859 TCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| ||||||||||| || || || || Sbjct 912 CTTGGCTAGAAGAGTCTTTCCAGTTCCAGG 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580373476771000